Ll_transcript_388814

• Id Trinity: TRINITY_DN50992_c1_g1_i8
• Name Transcript: Ll_transcript_388814
• Sequence: TCACAATCAATTATGATCAAATCAAAGCAATTAAACATGTAGATTTGTCCCTTACTCACCCCTCCTATTCATATCTATATTAGATAGTGAAAATGAAATG ACCCACTACCAATATTACACTTTCTTTTAAAACATTGAACTCAACAACACACAAAATTTGTGAATGAGAGATTCATACATAGGTGTCCATTTCTATCACT CTGTTACTACTGTTAGTGGTTAAAACATCCTCAAATATCTTTATATCATGCATTGGAATGCTTGTTCAATTCCATATCCAATTTCTCAACAATCTCTCTA ACTATTACAGTGACAGTTTCTGTATGAACTTCTGAGGTGTTATCATGGAGTGGAATTCAAAATCACTAGGGCAATGGGACTGGGAGGAGAACTTATTCTT TTTCAATGGAAAAGCTTCAGAAAATACTAAGTTACAATCAACCACAAATTGGAGTTCTGAAGCAGATCAAGAAATCAATGTTGGGCTATTGTATCCTTCA GGGGTTAGTGTTTGTTCTGAGTCTGAACTAATACATGCTTCTTCATCATGGAGCTCAAAATCAGCTTCCATCAATTCATCATCGAATGAGGATAGCAAAA TATCAATGTTCACTTTGGAAGGTTCTCAACATGATGATTCAATTGGTAAGAAAAAAGTCTCCAAAGAAGAGCTAGTCGAAACTTCACGAGCACAAGAACC CTCATCCGTCTCTGGTGAGCCATTTCTCACTCTAAAGCTTGGTAAAAGGTTGTACCTTGAGGATGTTTCCACGGGAAGTGATTCCAAGAAACCGTCTTCG AGTGCTGGAAAGAAATGTAAATCCAATGGTCAGAACTTGCAACATCCAAGCTGCCAGGTTGAAGGCTGTGGCCTTGATCTCTCATCTGCGAAGGTTTACC ATCGCAACCATAGAGTTTGTGAAAATCATTCCAAATCCCCTAAGGTGGTAATATTTGGGTCGGAATGCCGATTTTGCCAGCAGTGTAGCAGGTTCCATGG TCTGTCAGAATTTGATGATAAAAAGAGAAGCTGTAGACGACGTCTTTCAGATCATAATGCTAGGCGCCGCAAACCGCATGCTGATGCAGTCCGATTAAAC ACACTGGCTTTGTCTTCATCGCCCTATGATCGGAGGCAACTAATGAGCCCATTTGCATATTCAAGAACTGCTATAAATTTAGCATGCCAAGACATACACA GCAGCAAGTTCCCTCACACAAAAGATTTTCTCATGAAGCCTGAAAAAGCCTTCAATAAGATACCAAGTGCTGGAGGCATAGCAACCAAGAGTGTTATTAC AGGTATAGAATATCCTATAACCTCTTCTGATCTGAATGCTACACACCGTGCTCTCTCTCTTCTGTCAAACAACTCATCATGGAATACTGCATATGAGACC AACTCCTTCTCCATAACAACACATGCAATGTCTCATCATCACTTACCCTTTGCTTCATCAGGGTATTGGAACACTGATCAGCAACCACCAAACTCCGCCA TGTGTATCACCGTGGACTCGGATTGTGATAATAGCAATCGCTTTCAAGACTTCCAGTCGTGGAACGCACGCTATGAATCTGGTTTTCCTCGAAACCAGCT GGATTAACAAATGTGTCTGTGTCTATGTGCTCATTCAAATGGTTTCAGCTTGATGAAGTCACATGCAGCCTAGTCTAATTTCTTAGTCTTTAGGGTCTTA CTGTCTGTTGCAATATTGGAGTGTGTTTACTTTTGTCGTCTTCATTAAAACCGTGGAGCATCGGCGCAATAATAAGGTTTCTTCCTGTCTTTAGACCTTA AAAGTTATAAGTTCGTGTCGAGGTAACTACGTATCTCGTTATTGGTAAGATTTTAGATATCTACCATCGTTTAACTCTATCAGGTGGGAGCCTTGAAACT CTTTTCATGTGTATGAATAATTCCATCTAGAACTACTTTTATATCTATGCATGATGTAAATGGTGGTATATTTTTTTTGGTTTCCGACGAGTATCCTCGT ATTGGAGCTAATCTTATTCGAGCCGAGAATATCTACAGGTATATGGGGCTAACTCTTTCAGTGGGTATTTTTTCCGTTTACAAAGCTCGAACCGATACTT TACTTAAGGGGAAGTATCACTTGCCCAGTTTGTTTATGTGTAAAATATAAAAAGAAAAAGGTTCTTGGAAAATCTTAGTTGTTTCTCAAAGTTAAGTA
• Tissue: pods
• Gene name: LI_gene_181568;
• Additional information: details;

Expression of Ll_transcript_388814

FPKM

• PAB: 0.2
• PNAB: 1.3
• PS1: 3.3
• PS2: 0.4
• PS3: 0.2
• PW1: 0.9
• PW2: 0.5
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_388814

• Blastp: Squamosa promoter-binding-like protein 12 from Oryza sativa with 42.46% of identity
• Blastx: Squamosa promoter-binding-like protein 12 from Oryza sativa with 49.28% of identity
• Eggnog: Squamosa promoter-binding-like protein(ENOG410YKP9)
• Kegg: -
• CantataDB: Link to cantataDB annotations (CNT0002899)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019417930.1)
• Pfam: SBP domain (PF03110.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;