Ll_transcript_388828

• Id Trinity: TRINITY_DN50992_c1_g5_i11
• Name Transcript: Ll_transcript_388828
• Sequence: GAGAGGCAGGCACTTATGGAGTTGTGGTAGTACATGATCCACCTGTCCCTCTGCTACTGTTTGTGTTGTGCCCACTCTGCTCTCAACACAACACAAATGG CATGTTTCCCTCCTTTCTTCACTCTCCATTTCTCTTCACATTCCTCACCAACTTCTCTCCTTTAACCCATGCTCTTCTTTCCCCACTCACCACTATTCAC TATTCACCATTCCACCACACTACATTTGCAAATTACTGATTTCTGAGATCTTTTGATGGATTGGAATGCAAAATCTCTGTCGCAGTGGGATTGGGAGCAA TCACTCTTCCTCAATGCAAAAGCAACTGAAATTTCCAAATCACAGCCAAACTGGAATGGTGAAACAAACCAAGAAATCAATGTCGGTTTGATGGATACAT ATGGTGGCAGTGGTTGTTCTGGGTCTGAGCTAATACACACGTCTTCATCAAGGAGCTCAATATCAGCTTCCAACAATTCATCGTCAAATAGGGATAGCAA AACATCTATGCACACTCTTGAAAGTTCCCTTGATGCTTCCAGTGGTAAAAAAGAATTGTCTAATGTTGAAATTTCTCATGCACTAGAGCCCTCTTCTGTC TCGGGTGAACCACTGCTCTCTCTGAAACTTGGTAAGCGGCTGTACTTTGAGGATGTTTACCCAGGAAGTAATTCAAAGAGCCCGTCTTTTTCTGGGGCTC CTATGTCATCTTTGAGCACGGGTAAGAAAGGCAAGGGGAGTGGTCAGAATGTACAACTTACGCGCTGCCAGGTTGAAGGCTGTGGCCTTGATCTCTCATC GGCTAAAGATTACCATCGAAAACATAGAGTTTGTGAAAGTCATTCCAAATCCCCGAAGGTGGTTATAGCTGGCATGGAACGTCGATTTTGCCAGCAATGC AGCAGGTTCCATGATCTGTCAGAGTTTGATGAGAAAAAGAGAAGCTGCAGGCGACGTCTTACAGATCACAATGCAAGGCGCCGTAAACCTCATCCCGTGG CTGTTCGATTAAATCAACCAGCTTTGTCTCCATCACTCTATGATGGGAGGCAACATATGAGTCCTTTCACTTATTCTCGAGCTGCTACAAATTTAGCCTG GCAAGACACACACAGCAGCAAGCTCCCTCAGGCAAAGGATTTTCTCTTGAATCCTGCAAAAGCCAGTAATGAGATGCCGAGTATTGGCACTATGGTTTCG TATGATTTTAACTCCCCTTTTATATCCAAAGGCATTATTGCAACAAGGAGTGTTAATCCAGGTTGTTTAACATCTTTCTTCATAATTGAGCCTCATGTCA CATTTCATTTAGATTGTTATGTTTAATCTGTATGCATAATATAATTGAAGTTATGTAATATCTTTTGCAATATTGCAATATTGATTACTTGGTAAATACC TTTTGCAGGCATAGAAGACTCGATTACCTCGTCTGATCCTAATGTTACACAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAACTAATTCCTGGGGTTCA CATGAGCCTAAGTCCATTTCTGTAGAACACCCGAACAAAGCAACAGCAACAGCACATGCTATGAGTCAGCGCATACCCATTGCTTCACCAGAGTATTGGC ACATTGGTCAACAACCAGTGAATTCCGGCACGTGGATCTCCTACTCTAATTGTGAT
• Tissue: pods
• Gene name: LI_gene_181575;
• Additional information: details;

Expression of Ll_transcript_388828

FPKM

• PAB: 0.7
• PNAB: 2.8
• PS1: 1.5
• PS2: 0.2
• PS3: 0.5
• PW1: 0.8
• PW2: 1.3
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_388828

• Blastp: Squamosa promoter-binding-like protein 12 from Oryza sativa with 39.25% of identity
• Blastx: Squamosa promoter-binding-like protein 12 from Oryza sativa with 35.96% of identity
• Eggnog: Squamosa promoter-binding-like protein(ENOG410YKP9)
• Kegg: Link to kegg annotations (4341986)
• CantataDB: Link to cantataDB annotations (CNT0002899)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019424546.1)
• Pfam: SBP domain (PF03110.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;