Ll_transcript_528487

• Id Trinity: TRINITY_DN51033_c0_g1_i1
• Name Transcript: Ll_transcript_528487
• Sequence: GTACAATCTTTAGAAATTAAAATGGAACGGAAGAACATTTGGAATAGTGAGACTAATAACGATAATCTACACTCATGACAGAAGAGACAGACATCCCATC AAGTAATTGTTGGTGACCTGCTATGGTCATGGAACAACATTCTCTTCCTCCACCGTCTCAACCACCAACTCGCCGTCTCAAAAGAGGAAGACCTCCAAAA CCGAAGCAAAACGATCAAGAGAGTTCTCATGATGCACCAAAAAGGCCTAAATTAAAACGAAGTCGTTTTCAGCAAGGAACTTCAAGTGTTGCTCAACAAG CCTCTGATTTAACATTGATTGAGGCGATCAAAGGTAATGACAAGCTTATTCCTCATGTCGTCAAACTTTGGGTTGAACGCTATGAAATGGAGCCAAAACC TGCGATGGATGAACTCTTGACGATGTTATTTCAGGCATGCGGAGCCAAGGATTACAACAAAGGTGATCTCGTGGATGAGAATGATGTTGATGATGTTGTA GTTGCTCTGGTCAACTACGCTATAACTGGTGAACTTGAAGAATATCAAAATTCCAAAAAGGAGTTTAAAAAATTCAAAGAGAATCTTAAGTCATTCTGGC ATAATTTGGTTTGTGAATGTCAACATGGCCCATTGTTTGATCAGGTTTTATTTGACAAGTGCATGGACTATATTACTGCACTATCATGCACCCCTCCAAG AGTTTACCGCCAGGTTGCTTCATTGATGGGTCTTCAGCTTGTCACATCATACATAGCTATTGCTAATGTGCTTGGTGGACAAAGAGAGACTACACGTAGA CAATTGGATGCTGAAAAAAAGAAAAGAAACGAGAGACCTTCACTAGAGTCACTGAATAAGAGGTTTTCTGATACTCATGAGAACATAAGATTGTTGGAGG AGATGATGCGCAAAATATTTACTGGGTTATTTGTGCATCGCTACAGAGACATTGACCCAACTATTAGAATGTCATGCATTGAGTCACTTGGTCTATGGGT TCTGTCATACCCATCACTTTTTCTGCAGGATTTGTATTTGAAATATCTTGGATGGGCATTGAATGACAGAAATGCTGGTGTTAGAAAGACTTCAATAAAC GCACTGCAAAATATTTATGAACCAAATGATAATGTACCATCCCTTGGTTTATTTACTGAAAGATTTTCTCGGCGGATGATTGAGCTTGCTGACGACATTG ACGTTTCTGTAGCTGTTTGTGCCATAGGGCTTATTAAACAACTACTAAGACATCAACTTATTTCTGAAGATGACTTGGCTCCTTTGTATGATTTGTTGAT GGTTGATCCTCCGGAAATCAGGCTTGCCATTGGAGCACTAGTTTATGATCACTTGATTGCTAAAAAATTTAATAGCTCCAAATCAGCACCAAGAGACAAT TCTTCTGAAGTCCATCTTAAGAGAATGTTGCGACTTCTGGAGGAGCTCCCGCGTGATCCAATTTTGAGTATTTATGTGATTGATGATGTCTGGGACTACA TGAAAGCTATGAAGGATTGGAAGTGCATTGTATCCATGCTTCTTGATGAAAACCCATTGATTGAGCTCTCGGATAGAGATGCATCAAACCTGGTGCAACT CCTGTGTGCATCTGTGAAAAAGGCTGTTGGAGAAAGTATCATTCCTGCTACTGATGCTACTGATGACGGAAAACAATATCACAACAGAGCCCAAAAAGAA GCATATGAAAGTAATAAACAGGATATAACTGTTGCCTTGATGAAGAGTTACCCATTACTCTTGCGGAAGTTCATTTCAGATAAAGAAAAGGTGTCATCAC TGGTTGAGATTATTTTGTACATGAACCTTGAGCTCTATTCTTTGAAGAGACAGGAGCAGAGTTTCAAAAATATCCTCCAGCTCATTAAAGAAGCATTTTT TAAGCATGGTGACAAGGACACCCTGAGAGCTTGTGTGAAGGCAATTGATTTTTGTTGTGAAGAAAGTCAAGGGGAGTTGCAAGATCTTGCCTGTAATAAA TTAAAGGAACTTGAGGATGAACTTATTTCGAAGCTGAAATCTGCAATTAAAGTAGTAGTGGATGGTGGTGATGAATATTCTCTTCTTGTAAACTCTAAGA GGTTGTATGAGCTCCAATTGATGATATCTGTGCCTATTGATAATAACCTATATGATGACATTGTCATGGTGCTACGTGGTTTTAGGAATATGGAGGATGA GGTTGTTGGCTTTCTGCTTCTGAACATGTATTTGCACATGGCTTGGGGTCTGCTATCTATTATAAATGAAGAAATTGTTTATGAAGAATCCTTAGATTCT CTTCTGTATAAGCGCGATACATTGTTACAAGAACTTGAATACTTTTGCAACTTAGGTACTGACAGCATGGAAGGTGGTAAACAAGGAAGTGAATTAGCTT GCAGAGTATGCATCATACTTTCAGAAATATGGTTCTTATTTAGGAGGGAAAATTTCTTCGAGACAGTGTTGGAAAGATTATTATATGAGCCAAATGACTA TGTGCTTCGGAAATACTGGAAACTTTGTGAACAACAGCTTAATGTTTCAGAAGAGGAGGAAGATGAAGATGAAGATACTAATGGAGAGTATTTTCAGGAG ACAAATAGATATGTTGTTTTGACTGCTGCTATAAAGGTGGTTGCTTTTGATGCTGTTCCAAAGGAGTATCTTGCTTCTGAGATTATTTCACATTTTGTAA TGCATGGGACAAGTGTGGCCGAGATTGTAAAGCATTTGATCACAGTTTTGAAGGAAAAAGATGATGATTTAGCTGCCATTTTACTCGAAGCACTTAAAAA GGCATACAATCGTCATGTTGTGGATATTTCTGGCTGTGAGACTGATTCTGCAGATAGTAACTCTTTATCGGGATGTAAAGATCTGGCCGCTCAGCTTTCT GGAATATTTATTGGTGCTGACCGGACCAAACATAAGGCAGACATTTTAGAAATTGTCAGGGGAGGTATTGAATATGCTTTTGTAGATGCTCCCACTCAGT TGTCTTTTCTGGAAGCAGCTGTGATCCATTTTGTTCCAAAACTCCCTGCATCAGATGTGTTGGAAATCATGGACGATGTTCTAAAGCGAACAGAAAATGT CAATACAGAGGAAGATCCCAGTGGCTGGCGTCCCTATCACACATTTATTAGCTTACTTGAAAAGTATGTGAAGAATGATGGCAATCAAGAAGAGAAAGAA GAGGCTTCTGTAAGCCGCAGGGGTCACTCTCGTAAGCCACAAAACATGGAAGGAAAGAAGCTTTTTCATGACCAGAGCTCAAGTGACGACGAGGACTCCC TTAGTGAATACGAAGAAGATGTAGATGACGAGGAGGGGGGAGAAGAGGAGGAAGATGAAGATGATCCTTTGACAGATTCAATCAAATCATCTTCTAAAAC ATCAGGGTCATCCAACTAGTGATGTTAAGCTTGTAGGTTTTGGGCATTGGCTTGGAAAATGATAGTTTCGGATCCTTGTAATAATAATTAGCAATTCAAC TTGCTTGTTGTATGTGGCCATGGAGCTTGTTATGCTCAAACATTGGTTGCTTCAGCCTGTGCTGATAAATAATTACTAGTAAAATGCTATGTCTCTTCAT AGCCAAAAACTGAAAACTTGTGGTTGAATCTTGAAGCTCAAGAATATATGAACGAATACCTATTTATTGGCTAATAAAATACTTGAGTTGTTAAGT
• Tissue: pods
• Gene name: LI_gene_181846;
• Additional information: details;

Expression of Ll_transcript_528487

FPKM

• PAB: 0.8
• PNAB: 8.7
• PS1: 18.1
• PS2: 15.1
• PS3: 21
• PW1: 13.4
• PW2: 12.5
• PW3: 11.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_528487

• Blastp: Sister-chromatid cohesion protein 3 from Arabidopsis with 60.04% of identity
• Blastx: Sister-chromatid cohesion protein 3 from Arabidopsis with 60.95% of identity
• Eggnog: Stromal antigen(COG5537)
• Kegg: Link to kegg annotations (AT2G47980)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019444129.1)
• Pfam: STAG domain (PF08514.10)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;