| Id Trinity | TRINITY_DN51450_c2_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_380270 |
| Sequence | GAAACTCCTATTCTATGTGGGAAAGAGGAAACAATCAATTATTAATTTCTAATTATTGTGTTAGCAAAAAGGAAATTAACAAAAGCGGTAAAAGGAAAGA TTCTTTGTGTGTTTACGTATGAGACACTGTGTTCTATCTCTCACTCTCACCGGCGATATCGTCGGAATTTCCGGTTTTTTCTTACCCGATCACCAAATTA GATTCAATCTTCAACACCATTTTTGCGATACTCGCGAAAAAAGCGTATTCATCACATAAAATACCCATTCTCTTCTCATTTCTCAGTTACTGATTCCAAC TCTTAAGTGGTTAGAGATGGTGGATTACGTCAGCAGCGACGACGGTTACCAATATTCCGACGATCAAGATTTCTCTGCCGACGCTTACGAAAGCGACGAA ACCGATTATCAGTTGGTTACTACCAAGGCTTCGTCTACTATGGTGGTTACGAAAGAGTCGCTGCTAGATGCACAGAGGGAGGATTTGCGAAGTGTGATGG ACATGCTATCGGTGAAAGAGCAACATGCACGGATTCTGCTTATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGCGGACAATGGGGTTGC ACATCTCTTTGCGGAGGCTGGTGTAGCTTTGGATAAACATCATCACTCTAACTCGTTAGTTCACGCTTTAATAATGTGTGAAATCTGCATAGAAGATATT CCTAGTGATGAAGCAACAAGAATGGACTGTGGTCACTGTTTTTGCAACACATGTTGGACGTCGCACTTTGTTGTCAAGATAAACGAGGGCCAAAGTAAAC GCATTAGATGTATGGCACATAAATGTTATTCCGTTTGTGATGAAGCTGTTGTAAGAACTCTACTTGGTAGAAAGCACCCTGATATGGTCGAGAAATATGA ACGCTTTCTTTTTGAATCATACATCGAAGACAACAAGAGAATTAAATGGTGTCCTAGCATACCTAACTGTGGGAATGCAATACGTGTTGAAGATGATGAA TTACATGAGGTAGAATGTGCATGTGGTTTACAATTTTGTTTTAGTTGCTTGTCAGAAGCACACTCCCCTTGTTCATGTCTGATGTGGGAGCTTTGGGCTA AGAAGTGTCAAGATGAATCAGAAACTGTTAACTGGATAACAGGTAATACAAAACCTTGTCCAAAGTGCCACAAGCCAGTGGAGAAGAGTGGTGGATGTAA CTTAGTTAGCTGTATCTGTGGCCAAGCATTTTGTTGGGTGTGTGGTGGAGCCACTGGCCGAGAACATAATTGGTCAAGTATAACTGGTCATAGCTGCGGT CGCTATAAAGACCAAAAAAAATCGGCGGAACGGGCAAGGCGGGATCTATATCGTTATATGCACTATCATAACCGTTACAAAGCTCACACAGACTCCTTTA AGCTTGAAACTAAATTGAAAGAGACCATACAAGAGAAGATTGATATTTCAGAAGAAAAAGATTCTAAACTCAGAGATTATAGCTGGGTAATTAATGGTCT CTCCAGACTTTTCAGATCTAGGCGCATCCTATCATATTCATATGCATTTGCATTTTATATGTTTGGACATGAGCTTTTTAAGGACGAAATGTCAGAAGCT CAAAGGGAAATAAAAAAGAACTTATTTGAGGATCAACAGCAACAGCTTGAGGCAAATATTGAGAAAATCTCTAAAATTTTGGAGGAGCCTTTTGATACCT TTCCTGATGATAAGGTTATGGAGATAAGAATGCAGATAATCACTCTGTCAGCAGTTATTGACAAACTTTGTCAAAAAATGTATGACTGCATCGAGAATGA TTTATTGGGTTCTCTCAATCACATTCACAACATAGCTCCATACAAGTCAAAGGGCATAGAGAGGGCATCAGAACTTTCAGTTTGGAGCAATAAAGCTAAT AATATCGAAATGTTAACTGAGTGAAAAAGGATTATTGTATATGCTGCAAGCTTAGGTGGAACAGCAGAAGTTGATCAGCCTTCTGGATCACGGAGCTCAG ATGGCCATGGATGCTCTTCTCCTAAACGTGCTAGAAAAGAAAGTGTTGGAGGAGGTACTGGTGGCAGGTTTTTTGATCTAAACTTGCCAGC BLAST |
| Tissue | pods |
| Gene name | LI_gene_185015; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_380270
| Blastp | Probable E3 ubiquitin-protein ligase ARI1 from Arabidopsis with 64.85% of identity |
|---|---|
| Blastx | Probable E3 ubiquitin-protein ligase ARI1 from Arabidopsis with 62% of identity |
| Eggnog | RING finger) protein(ENOG410XP9Y) |
| Kegg | Link to kegg annotations (AT4G34370) |
| CantataDB | Link to cantataDB annotations (CNT0000261) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019454167.1) |
| Pfam | IBR domain, a half RING-finger domain (PF01485.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |