Ll_transcript_446109

• Id Trinity: TRINITY_DN51838_c0_g1_i5
• Name Transcript: Ll_transcript_446109
• Sequence: GAATAAGCGAAGGGTGTGTGGATAGCAGTAATCTTCACTAGTTGTAAAATTGTAAGAGATTCATTGCTATACGGAAAATAACGCATAAATAAAACATTTT TTCATTTTCAAAATTTCATTTTATTTCTAAAATCTCAATCTCGTGTCTTCCATTTCACCATCGAATCGAGGGATACAGCAAAAACGGCGATCCAATCCAG CGTTTCTTTTTCACCGAAATCGAAACGCTGTTTCCGAGCATCACTTTCCTTCAGCTATTGTTCCTCGTCAATTCCCAATATTGGAAGGTTTTAATTGTTG ATTCTGGTCTAATCAACTTGTGGAGTTTTAATTCAAGTTCCAAACATATAGAGCCATGAGTTTTGTTTTTGGAGGAACAAGAGCAGATATAGAAAATGGA TTTCCAGGATTTATACCTCAGAGGCGTACATTGGTATGCATGTTGTGTATCGATTATCTGCATGAGTGATCTAATGTTGATGATTTATTGTTTGTGTTTC CCGGTTTTGTAACTAAAAGCATGATTAGATATGTAGCTTGTTTAACATAAACTAAAGCTTCATATATATTCCAACTTTTTCTTCAGCGTGTTCATGCTGC ACGTCCGAGTAATTCCAATTCTCTCACTTTTCTTGTAACAGTTCTCCTGTTATTCATGATACTGAACTCTCAACAAATGTCACCAAATTTCATGCTCTGG CTGGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTACGCGACATTTCAACAGCTTCAAGCGCAGGCCCAAGCTCATGCCGCAACAGCCAATG GCCTTCTTGGACACACAGAACTGCGGTTGCATATGCCACCATCAATAGCACTCACAAGCCGAGGGCGGCTGCAAGGCCTCAGACTTCAGCTTGCACTTCT TGATCGAGAGTTCGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGTTTCTTCTGGATCTTCAATGACTGAGGAAGAGATCAATGCT CTTCCTGTCCACAAATACAAGGGTTCTGGTCCCCAAAGCAGTAGTTCCTCAATGCAACAAGCTTCATCTTCCACATCTGCCGAGGTATTAACTTCATCCT TGGTTATTTGTTTTCCCATTTGACATAAAGAAGTAAATTACACTGCATCTTATGGGAACTCCAGTTCTCTCTTTAGGCCTTGAGGGTATTGCCTTCTGCA TGTTTTTCCAGTGATTTTCTTGCACTATTCCTGACATTATGGTGAAGTGCTGATACTTGTCAAACTACATTTTATATGTGATGACTGTGAATCTGTGCTA TAAATATTCAGCAGTACAGCATATTTATCCTGGACCTGGTTGAGTACTTCAAAATTTGGCAATAACATTTATATTAGAGTAAATTACATTGACATCTTTG AGATTTAGTCAAACTACACATGTCACCCCTCCCTTTCTTACTCCTACACAAACATCCTTTAATTTATGTGCATCCATTACGCCCTGTACCCCAACCAGGG ACGGTGAGTGTAATGTTTGTAATGAATCTAATTTACTTTATGTATTATTTTCTTGAATATCTTATCATTTACATCCATTGATCCACCATTGTATATTCAT ATAAATTCACTGGAACTGTCCACTGTCTGATGTTTTCATGGGACTGTTAAATAACAGAAAGGATCGCCAGACATTTACATAGTTAATCTTTTCTTGTTGT GCTTGTAAGTTTTCATATTTTAAGCTGTTATTGTGGAGTGGTCGGTATTTCGTACGAATAATTTATTGGTTTTTTGTGTGGCAGAAGAAGCAAGATCATT CAAACGCAACTGGGAGCATGAAAGTCTCTGATGATGAGCTCACTTGCAGCGTATGTTTGGAGCAAGTTAATGTTGGAGATATACTCCGTAGCTTGCCCTG CTTGCATCAGGTTAGTTATATATTCTAGGAAGTGAAAATGCCAGTTTCACCCTTATTTAGCTTGCCCTGCTTGCCTTAAGTTATTAAACCCAAATATTTT GGGTTTTTAGTAAAGTAAATATTGGTGCAAGTTGGGTTGGAAACAATCCGAACCTGGATTCAACTCGATAAGAATCGGCTTAACTTGAAACTCGACTCGA GGCCGATATCAATTATTTTTCAGCTCGAACTAGACTTTGAGTTCGTGAACTGGTCAACTCATTAGCTTGAGTTGGTTTAGTTCGTTGGGAGATTGTGAAC TGTTTACTTCAACTCATTATTTTGATTGGTTCATTTCATCAGTTCGAATGATGATTATTTATTTAAGATATTAAATTTAAAGATTGTATATACAATCAAG CTAGTTCATGAGTCTAACGAGTTGAACTGTAATTGGCTCAAGTTCTGCTAGTTTATTTAATGAACTCAATTTTTAGCTCAAGTTCAATTCATTTGGTTAA TGAACGAAGCTTATCGAGTTAAATAACAAGTCGAGTTTCAAACGAATGACGAGTTGATTCAGTTTATTATCAGTCCTAGTGGAAGCATGCATATGCATAT GCTAATGAACCAATTATTGACTATTATTTGAAGGACTTGAGTAATCCTAAAGTTTGTCTGAAACGTTGGGGACTTGGGGTTGATTTTATGTTTTTATTTA TCAATCTAATGTGATACTGAGACCTCGTTTATGTGTTTTGAAGTTTCACGCTAACTGCATTGATCCCTGGCTGCGGCAACAAGGGACATGCCCTG
• Tissue: pods
• Gene name: LI_gene_187976;
• Additional information: details;

Expression of Ll_transcript_446109

FPKM

• PAB: 0.5
• PNAB: 0.2
• PS1: 0.1
• PS2: 0.1
• PS3: 0.2
• PW1: 0.1
• PW2: 0.3
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_446109

• Blastp: E3 ubiquitin-protein ligase SDIR1 from Arabidopsis with 77.03% of identity
• Blastx: E3 ubiquitin-protein ligase SDIR1 from Arabidopsis with 62.78% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (AT3G55530)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019439463.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;