Ll_transcript_445910

• Id Trinity: TRINITY_DN51869_c1_g1_i6
• Name Transcript: Ll_transcript_445910
• Sequence: CGCTCTCATTTCTCCCCCAACAACTCACTACACACTAAAAATACTTTCAGTTAAACAGAGAAAACGAAGGCGAAAGCGAAGGTTAAGAAGATTAAGATTT TCTCAACCGAAAATTTCTCGCTTCAACGTTCGATTATTCGGATCCAATACTCAAATGAAGGCTATTAATCCTCTCATCACTTTCGAACACAAGAGGGATG TATATGGATTTACTGTGCGACCTCAGCATCTGCAAAGTTACCGTGAATATGCTAATATATACAAGGAGGAAGAAGTGGAAAGGTCAGATCGATGGATGTC ATTTCTAGAAAGGCAAGCAGAGTCTTCTGAATTTGCCACAGACAGATTAGGTGTTGAGGAAGATGAGACAGTTTTGAGGGCTCAAGCCTTAGAGCACGAA GCTGATGCTGGCACGGAGAAAGCTGTTGATGGAGATGAATTAGGCACCCAGAAGCCTGGTTCTGATACTACAGCTGAAAATGATAGTCCGAAAGAGGAGA CTGAAGTTGATAGAGTCCTATTATGGACAGAGATAAGACCATCTCTTCGTACTATCGAGGATATGATGAGCATTCGTGTGAAGAAGAAAACTGCGTCAAT GAAAACTATTGGAAACAAGAAGGGCATGTTAAAGGATGAACAGATTGTTGGAGATGGGAAATCACTATCTCATACTGATGGTGCAAAATCACGAAAGGAA GGGTTTGTGGAAGACTCTGACGATGAGTTCTATGAAGTTGAGAGGTCAGATCCTAGTCCAGATACACCTACAGTTGATGGCACGAGTGCCTCTGCAAATG GTATTTCTGCTGACACTGGAACACTTGAGGCTTCATTTCCTTGGAAAGAAGAGTTGGAAGTTCTTGTTCGTGGAGGAGTGCCAATGGCACTGAGGGGAGA GCTTTGGCAAGCTTTTGTGGGTGTAAAAGCAAGGCGTCGGGAGAAGTATTATCAGAATCTGCTAGCTTCAGAGAATGATTCTGAAAGAAAAATGGATCAG CAAAGCATGCAGCAGTCAACTGACGATAATGGGAAAACCAATGCAAATCCTGTATTTGTGTCAGAAAAATGGAAAGGGCAGATTGAGAAGGATCTGCCAC GAACATTTCCTGGTCACCCTGCTCTGGACCAGGATGGTAGAAATGCTCTGCGGCGATTACTTACTGCATATGCTCGACATAATCCCTCAGTTGGTTATTG CCAGGTCCTTGCTTCTGAAAAGAGTTACATTCTTCATTTTATCCTACTAATTTTTCGGTATGGTTGTGATGAGTTGTATCTCAAAAACTATCTGTCAAAT GATCATTGAAGATATACAAGTGGAACAAGCAAGTACCGTTTGAGGTACCATGCTTCAAGGTGGTAAGGGGACCCAGTGTTCAAGGGACACCTTTCATATC TGTGCTGTGTATGCTTCATGAACATTAATGATCTGTCCTATAACGATAACATGGACAATGAAATGATTGAAGCCAAAAAGTATTAATTTACTATATGCCT ATCTACACACACATGTCATTTATGTTCATGACAGCTATGACTCACTGACTGAACTTGTTTGGATAACTTACACTGCAGGCCATGAATTTTTTTGCTGGTT TATTGCTGCTTTTGATGCCTGAAGAAAATGCATTTTGGACCTTGATGGGAATTTTAGATGATTATTTTGATGGTTATTATTCTGAGGAAATGTTAGAATC TCAGGTGGATCAACTTGTTTTCGAGGAGTTGGTGCGGGAGAGGTTTCCCAAACTAGCCAATCATCTAGATTACCTGGGAGTGCAGGTAGCATGGGTTACT GGACCATGGTTCCTTTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGTTCTTCGAGTGTGGGATGTGCTTCTTTTTGAAGGAAACCGAGTTATGCTAT TTAAAACTGCAGTTGCTTTAATGGAGCTATATGGTCCAGCATTGGTAACAACTGCGGATGCTGGAGATGCAATTACTTCACTTCAGTCATTGGCTGGGTC CACTTTTGATAGCAGTCAGCTTGTATTGATGGCTTGCATGGGTTACCAAAATATAAATGAAATTAGATTGCAAGAGCTTAGGAATAAACATCGGCCAGCT GTAATAGCTGCAGTTGAAGAAAGATCAGAAGTGCTTAAAGCTTGGAGGGATTCTAAGGGCCGGACATCAAAGAAATTTGGTTTTAAGCATGATCCTAAAA TGGGGCAATCTGGGAGTTTATCTCGTGCAGAATCTGGTTCCACTAATAGGGAGGATATTTTGATTAGTCTGACTGGGGAGGGTGGGATAGATTCTGTTCC AGACCTTCAAGAGCAGGCTGACAAGGATAACTACTGGCCTCAGCTGATTCAGGCTCAATTTTCCACCTTTATGAACTTCAATTTTTCATTTCATTACAGT TATGTTTTTGCTATCTATAACTAGTTCAGTGCCTGTACATCTCACTAGAGTTGGGCAGTATTTTGGTGTTCTATTCCTAAAACTACAAGTTATGTGATAT ATTAGGATATTGTGCCCCAACCTGAAATTGATTTTCACGTTGGTTTTGTTTTAGTTCGGGGAAATTATGGCCCCCAATTGAGCTATTTGATTATCACCAA TTCCATTTCTTTTGAAAAATCTAATTCAAGAAGAAAGTACAATAAATACATGCTCAAAAACTGGAACAACATAAAGGGGAGATTTTTTGTTATAGTTTTC TTGATCTTTATTTCCATTCTATTATGAAATATTTGTTGAAAATCCAATCTTTACATGAATTCTCATCTACTCCAAAAAGAAAAAATATCATTATGTTGTG AATTCCATGTAGGTTGTCTGGTTAAAGGATGAACTTTGCAGATTACAAGAGGAGAAAAGATCAGCTCTTCTCAGAGCGGAGGAGCTTGAAACAGCATTAA TGGAGATGGTCAAGCAGGATAATAGGCGGCAACTGAGTGCCAAGGTTGAGCAACTAGAGCAAGAGGTTGCCGAGCTTCGACAGGCACTTGCTGATAAGCA AGAACAGGAAACTGCTATGATCCAGGTCTTGATGCGGGTGGAGCAAGAACAAAAGGTGACAGAGGACGCTCGCAGGTCTGCGGAGCAAGATGCATCAGCA CAAAGATATGCCGCCCAAGTGCTTCAGGAAAAGTATGAAGAAGCGACTGCTGCATTTGCTGAAATGGAGAAAAGAGCAGTTATGGCAGAGTCTATGCTAG AGGCAACATTGCAGTATCAGTCTGGCCAAGTTAAACTGCAACCTTCTCCAGGATCCTCACGGCCAGACTCTCCAGCATCAAAAAACAATCAAGAGCCTAA GAGGATAGGCTTGTTTGGACTCGGATGGCGTGATCGAAACAAGGGAAAACCCACTGTGGAAGAGCCAGCTGAGGAGAAGCCCGTCGTAGAGGCAGAAAGT ACAACCAACAAGATGGTGGCGGAGGCACAAATGAACCAACAAGACGGCAATGGCCTTGTAGTATAGCATGAATAGGAAAGGAGGTACTACCAAGATTCTG TCTAT
• Tissue: pods
• Gene name: LI_gene_188166;
• Additional information: details;

Expression of Ll_transcript_445910

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0
• PS2: 0.2
• PS3: 0.7
• PW1: 0
• PW2: 0
• PW3: 1.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_445910

• Blastp: TBC1 domain family member 8B from Homo with 35.53% of identity
• Blastx: Putative GTPase-activating protein AN11010 from Aspergillus with 32.6% of identity
• Eggnog: TBC1 domain family member(COG5210)
• Kegg: Link to kegg annotations (54885)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441616.1)
• Pfam: Rab-GTPase-TBC domain (PF00566.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;