Id Trinity | TRINITY_DN51973_c3_g1_i5 |
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Name Transcript | Ll_transcript_397033 |
Sequence | TATGTAAATATGCTCTCTGCTAGCCTAGTCCCACATAGCTGCCGACCACTGAAAGAGACTACAATCCAATAAACTGTGCGCCACAACCTTCATCAACCTT ATTATAAATGATGATGCAACATATATGACTCTTGCATTGTGCCTCACCTCTTCAACTTCCCTTCCCTTCCTCTAATCAGACAGTAAAGAACTTCTTTGCT TTCTTTTACATCATCAATTCTTTCATTCATTCATTCTTCTAAAGAAACTTCCATTCTCAGAAATGGTCAAGTTACAAATGGCTAGGATCATGACAGAGGT TGCTCCACCAAGATTTATCTCAGTCACACGCCACAGGATGAAGAAAATGCTAGACACAATTGCTGAGGAAGAGAATGACTTAGATGCTACTACTAACAAA TGTATCTCCTCAAAAAAGTGTGGTTCTTCCACTATAGGTCTAGCAGAGAGGCCAGTTTTGGTGAAAAACTTTTAAATAGGCTGAATCAAATACAAAATAT TATGTACTGAGAAGAATAAAAGAGGGAATGGGCATCACGTGGAGTCAGTAGGATGAGGCGGTCGGAAGAGACTGAGCCCGAACGAAGCCAATCACATTGA GGACCTATTCTTGGGAACTATGGCTTATGCCGTACAGGTTTCACCCGTGAGGTCTCTCTTTGATCATCTCAGCCTCCTTATTTCTTTCGGGGCTACAGCA CAAATCCTAGCGATGAAGCTTTTCGAGAAAGGCCCTGGAGAGCAATCAGCTCGGAAGAAAATAGATTTATGAATGGAATAAAATATGCAGTATTTACAGA CAAAAGTATTCGGTTATTGGTGAAAAATCAATATACTTCTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGT GTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGTAAAGGGTAGAAGAATGCGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTA CGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAACATGGCGATACATTTATACAAAACTTCTACCCC GAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAAAAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGCCGTAATGCCAGA GGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGGCGGAATGAAAAGGACATATATGGTAGAATCGTAA CCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATCATTGG AGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATTGATTTACGTAATTGGAAGTAACCA ATTAGGTTTACGGCGAAACCTAGAAATCGATCACTGATCCAATTTGAGTACTTCTACAGGATAGACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGT GATTGAGTTCAGTAGTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATAAGTAATATGGAGAAGACAAAATTGTTTCAAGCACCGACAGAACCA GAAGCGCCCCTTGTTTCAAAGAGGGGAGGGCGGGTTATTCACATTTCATTTGATGGTCAGAGGCAAATTGAAAGCTAAGCAGTGGTAATTCGACGGATTC CCCCGGGGAAAAAAAGAGATGTCTCCTACGTTACCCGTACTATGTGGAAGTAGCGACGTAATTTCATAGAGTCATTCGGTCTGAATGCTACATGAAGAAC ATAAGCCAGATGAAGGAACGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTCATGCGGTACTT CATTATGCGATATATATAAGATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGTAAGAAGCTTGTACAGTTTGGGAAGGGGTT TTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTA GAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTC AGCAACAGTCGGACAGGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGA GTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTG GAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTGCGTCGCCGTAGTAAATAGTAAAGTCGAGAAAATAGAATTTGTTTCTTCGTCTT AAAAAAAAATAGGAGTAATTGACTGTGACATGACACGTTCACTAAAAAAAAATCCTTTTGTAGCGAATCATTTATTAATAAAAATAAATAAACTTAACAC AAAAGCAGAAAAAGAAGTAATAATAACTTGGTCGAGAACATCTACCATTATACCCACAATGATTGGCCATACCATTGCTATCCACAATGGAAAAGAACAT TTACCTATGTATATAACAGATCGTATGGTAGGCCATAAATTGGGAGAATTTTCACCCACTCTAAACTTCCGAGGACATTCGAAAAATGATAGTAGATCTC GTCGTTAACGTTAATTTAGTAATAGTCATTTTTTAATTACTCAAAAATAATTTCTTAGAAAGAAAAAAAATATTTATTCATTTTTTAGTGAAAATAGAAC CTTATGATATGATAAAAAAAAAAAATATTTATAGATAAAAAGGTAAGAAAGGCACGCCATGACCTATTATTCTTAAATAATAAGTGGATAAAGATAAAAA AATAAAGTACAGAAATTAGGATGTATCATTTTATGTATAGTAGTCATTTTATGTTTTATGTATATTAGTGGAGAATTATGGGACAAAAAATAAATCCGCT TGGTTTCAGACTCGGGACAACTCAAAGTCATGATTCTCTTTGGTTTGCACAAACAACAAATTATTCTAATAATCTACAAGAAGATAAAAAAATACGAGAT TGTATCACGAATTATATAGAAAAAAATATAAAAATATCTTCTGGTGTCGAGGGGATTGCACGGATAAAGATTCTAAAAAGAATCGATCTGATTCAAATCA TAATCTATATGGGATTTCCAAAATTATTAATAGAGGGTAAGCCCCGAAGAATCGAAGAATTACAAATGAATGTGCAAAAATATGTGCACCGAAAACTCAA CATTGCTATTACACGAATTTCAAACGCTTATAGACACCCTAATATTCTTGCAGAATTTATAGCTGGACAATTAAAGAATAGAGTTTCGTTTCGTAAAGCA ATGAAAAAAGCTATTGAATTAACAGAACAGGCGGGTACAAAAGGAGTTCAAGTACAAATTGCAGGACGTATCGACGGAAAAGAAATTGCACGCGTCGAGT GGATCAGAGAGGGTAGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTCCTATCCAGTTCGAACTATTTATGGGATATTAGGGATCAAAGT TTGGATATTTGTAAATTAATTTTATTTATCTTTAAGATTTCATGTTTCGATAAAACAGAAAAAATTAAAATGTATAATTTTTTATTAAAAAAAAATGCGA AATTTTTATAAGATTGAATAAATTTGATTAATTATTTGATTTTGATATTGATAGAATTGCTATGCTTAGTGTGCGACTCGTTTATTTTTTTTTTAGGGTG GTTAGAATTTAAGAAAAAAAGAAACACCGAATCGTAGTATGAATTAATTAATAACGAAATAACAACCAACTCATCGGTTTGTATTATCTGGACCTAACGA ACTAGTCAAAATAAATATAAAAAAAGGATAGAATATATTGGAAATATAATTATAACAATTGAAATATTGCATTGCATAAAAAAAGGAAAAAAAGCGAATC TGATTATGAGTTTTAAAGCAATACGAATATACAGATAAATGAAGGGTTGAAAGAAAGAGAGAAAAAGAATATCAATGATATAGAATTCTAATATGTCAAG GTCTACGGGTCATCTCATAACTCTCATAAAAAGTAGTGTAATAGCGCAATTAATTAATCCATATATCCATATTATCGATGAATATATTGCTAGAACAAAC AAATCAATCAAGAGCCAAGAATCAAAAAAAACTGAGAAGGTTGATTCAAGAAAAAAAAAGAATCTCATTTTAAATCTTATTAGCTCTTAGGGAGGCTCCG TTGTAGAATTCAGACCTAACCATTAAGGTAGAAGCGATGGGAACGACGAAACCTATGAATACCTAAGATTTTATTAAAAACAAATCTTAATGATTCGTTG GGTGGGATGGCGAAACGAACCAAGAACCAATCCGTTTTTTTTTTTTTTTTTTTTTTTTCTTTTACCCTATATTTAATCTTTAATTGATAATGAAAGAGTC CATTTTT BLAST |
Tissue | pods |
Gene name | LI_gene_189010; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_397033
Blastp | 50S ribosomal protein L2, chloroplastic from Carica with 100% of identity |
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Blastx | 30S ribosomal protein S3, chloroplastic from Lotus with 89.81% of identity |
Eggnog | - |
Kegg | - |
CantataDB | Link to cantataDB annotations (CNT0002678) |
Mirbase | osa-MIR5538 (MI0019059) |
Ncbi protein | Link to NCBI protein (YP_008963639.1) |
Pfam | Ribosomal Proteins L2, C-terminal domain (PF03947.17) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |