| Id Trinity | TRINITY_DN51973_c3_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_397034 |
| Sequence | TATGTAAATATGCTCTCTGCTAGCCTAGTCCCACATAGCTGCCGACCACTGAAAGAGACTACAATCCAATAAACTGTGCGCCACAACCTTCATCAACCTT ATTATAAATGATGATGCAACATATATGACTCTTGCATTGTGCCTCACCTCTTCAACTTCCCTTCCCTTCCTCTAATCAGACAGTAAAGAACTTCTTTGCT TTCTTTTACATCATCAATTCTTTCATTCATTCATTCTTCTAAAGAAACTTCCATTCTCAGAAATGGTCAAGTTACAAATGGCTAGGATCATGACAGAGGT TGCTCCACCAAGATTTATCTCAGTCACACGCCACAGGATGAAGAAAATGCTAGACACAATTGCTGAGGAAGAGAATGACTTAGATGCTACTACTAACAAA TGTATCTCCTCAAAAAAGTGTGGTTCTTCCACTATAGGTCTAGCAGAGAGGCCAGTTTTGGTGAAAAACTTTTAAATAGGCTGAATCAAATACAAAATAT TATGTACTGAGAAGAATAAAAGAGGCATGATTGCTAATATTTTTCATTCATGGCTCATAGGCTGAATCAAATAAATAGGCAAGAGAAAGAACACAACTAG TTTATAATAATGTGCTGTTTTTTCTCTCAGGGAATGGGCATCACGTGGAGTCAGTAGGATGAGGCGGTCGGAAGAGACTGAGCCCGAACGAAGCCAATCA CATTGAGGACCTATTCTTGGGAACTATGGCTTATGCCGTACAGGTTTCACCCGTGAGGTCTCTCTTTGATCATCTCAGCCTCCTTATTTCTTTCGGGGCT ACAGCACAAATCCTAGCGATGAAGCTTTTCGAGAAAGGCCCTGGAGAGCAATCAGCTCGGAAGAAAATAGATTTATGAATGGAATAAAATATGCAGTATT TACAGACAAAAGTATTCGGTTATTGGTGAAAAATCAATATACTTCTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTC TTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGTAAAGGGTAGAAGAATGCGACCTATTATGGGACATACAATGCATTACAGACGTATGA TCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAACATGGCGATACATTTATACAAAACTTC TACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAAAAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGCCGTAAT GCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGGCGGAATGAAAAGGACATATATGGTAGAA TCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTAT CATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATTGATTTACGTAATTGGAAG TAACCAATTAGGTTTACGGCGAAACCTAGAAATCGATCACTGATCCAATTTGAGTACTTCTACAGGATAGACCTCAACAGAAAACTGAAGAGTAACGGCA GCAAGTGATTGAGTTCAGTAGTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATAAGTAATATGGAGAAGACAAAATTGTTTCAAGCACCGACA GAACCAGAAGCGCCCCTTGTTTCAAAGAGGGGAGGGCGGGTTATTCACATTTCATTTGATGGTCAGAGGCAAATTGAAAGCTAAGCAGTGGTAATTCGAC GGATTCCCCCGGGGAAAAAAAGAGATGTCTCCTACGTTACCCGTACTATGTGGAAGTAGCGACGTAATTTCATAGAGTCATTCGGTCTGAATGCTACATG AAGAACATAAGCCAGATGAAGGAACGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTCATGCG GTACTTCATTATGCGATATATATAAGATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGTAAGAAGCTTGTACAGTTTGGGAA GGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAAT TAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAA CTGCTCAGCAACAGTCGGACAGGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTA AGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTG CACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTGCGTCGCCGTAGTAAATAGTAAAGTCGAGAAAATAGAATTTGTTTCTT CGTCTTAAAAAAAAATAGGAGTAATTGACTGTGACATGACACGTTCACTAAAAAAAAATCCTTTTGTAGCGAATCATTTATTAATAAAAATAAATAAACT TAACACAAAAGCAGAAAAAGAAGTAATAATAACTTGGTCGAGAACATCTACCATTATACCCACAATGATTGGCCATACCATTGCTATCCACAATGGAAAA GAACATTTACCTATGTATATAACAGATCGTATGGTAGGCCATAAATTGGGAGAATTTTCACCCACTCTAAACTTCCGAGGACATTCGAAAAATGATAGTA GATCTCGTCGTTAACGTTAATTTAGTAATAGTCATTTTTTAATTACTCAAAAATAATTTCTTAGAAAGAAAAAAAATATTTATTCATTTTTTAGTGAAAA TAGAACCTTATGATATGATAAAAAAAAAAAATATTTATAGATAAAAAGGTAAGAAAGGCACGCCATGACCTATTATTCTTAAATAATAAGTGGATAAAGA TAAAAAAATAAAGTACAGAAATTAGGATGTATCATTTTATGTATAGTAGTCATTTTATGTTTTATGTATATTAGTGGAGAATTATGGGACAAAAAATAAA TCCGCTTGGTTTCAGACTCGGGACAACTCAAAGTCATGATTCTCTTTGGTTTGCACAAACAACAAATTATTCTAATAATCTACAAGAAGATAAAAAAATA CGAGATTGTATCACGAATTATATAGAAAAAAATATAAAAATATCTTCTGGTGTCGAGGGGATTGCACGGATAAAGATTCTAAAAAGAATCGATCTGATTC AAATCATAATCTATATGGGATTTCCAAAATTATTAATAGAGGGTAAGCCCCGAAGAATCGAAGAATTACAAATGAATGTGCAAAAATATGTGCACCGAAA ACTCAACATTGCTATTACACGAATTTCAAACGCTTATAGACACCCTAATATTCTTGCAGAATTTATAGCTGGACAATTAAAGAATAGAGTTTCGTTTCGT AAAGCAATGAAAAAAGCTATTGAATTAACAGAACAGGCGGGTACAAAAGGAGTTCAAGTACAAATTGCAGGACGTATCGACGGAAAAGAAATTGCACGCG TCGAGTGGATCAGAGAGGGTAGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTCCTATCCAGTTCGAACTATTTATGGGATATTAGGGAT CAAAGTTTGGATATTTGTAAATTAATTTTATTTATCTTTAAGATTTCATGTTTCGATAAAACAGAAAAAATTAAAATGTATAATTTTTTATTAAAAAAAA ATGCGAAATTTTTATAAGATTGAATAAATTTGATTAATTATTTGATTTTGATATTGATAGAATTGCTATGCTTAGTGTGCGACTCGTTTATTTTTTTTTT AGGGTGGTTAGAATTTAAGAAAAAAAGAAACACCGAATCGTAGTATGAATTAATTAATAACGAAATAACAACCAACTCATCGGTTTGTATTATCTGGACC TAACGAACTAGTCAAAATAAATATAAAAAAAGGATAGAATATATTGGAAATATAATTATAACAATTGAAATATTGCATTGCATAAAAAAAGGAAAAAAAG CGAATCTGATTATGAGTTTTAAAGCAATACGAATATACAGATAAATGAAGGGTTGAAAGAAAGAGAGAAAAAGAATATCAATGATATAGAATTCTAATAT GTCAAGGTCTACGGGTCATCTCATAACTCTCATAAAAAGTAGTGTAATAGCGCAATTAATTAATCCATATATCCATATTATCGATGAATATATTGCTAGA ACAAACAAATCAATCAAGAGCCAAGAATCAAAAAAAACTGAGAAGGTTGATTCAAGAAAAAAAAAGAATCTCATTTTAAATCTTATTAGCTCTTAGGGAG GCTCCGTTGTAGAATTCAGACCTAACCATTAAGGTAGAAGCGATGGGAACGACGAAACCTATGAATACCTAAGATTTTATTAAAAACAAATCTTAATGAT TCGTTGGGTGGGATGGCGAAACGAACCAAGAACCAATCCGTTTTTTTTTTTTTTTTTTTTTTTTCTTTTACCCTATATTTAATCTTTAATTGATAATGAA AGAGTCCATTTTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_189010; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_397034
| Blastp | 50S ribosomal protein L2, chloroplastic from Carica with 100% of identity |
|---|---|
| Blastx | 30S ribosomal protein S3, chloroplastic from Lotus with 89.81% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0002678) |
| Mirbase | osa-MIR5538 (MI0019059) |
| Ncbi protein | Link to NCBI protein (YP_008963639.1) |
| Pfam | Ribosomal Proteins L2, C-terminal domain (PF03947.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |