Ll_transcript_397892

Id TrinityTRINITY_DN51994_c1_g1_i15
Name TranscriptLl_transcript_397892
SequenceCAAAATTGTCCATTTCTAATTTTTTGTTAAAATAAATTAAAATCCAAAATCACTTTCATTTCTCACTCTCTCGCTCACACTTATTTCGTTTACTTCTCAA AACCCTCTCTTCAGATTCAGAGAGAAAACACACAACCTTCGAATCGGGTTTTGTGTTCAGCTCAGTGAAACGCTTAGAGGACGCGATTTTTTGCTGTTGA GGTGAGAAAGAGGATTCTTTTAAAGTTATGGAGGATAATCCCCCTTCAAATTTTTTGGATGGGGAGGTCGTCGGAATAAGATTTGGCATGGCTACACGCC AGGAAATTTGTACAGCGTCCATTAGTGACTCTGCAATTAGTCATGCTAGTCAGCTGTCAAATCCTTTTCTTGGCCTTCCCCTTGAATTTGGAAGATGTGA ATCATGTGGTGCTTCTGAAGCTGGGAAATGTGAAGGCCACTTTGGTTATATTGAACTACCTGTTCCAATATACCATCCAAGCCATGTCAGTGAATTGAAG CGGATGCTGAGCCTGGTTTGTTTAAACTGCTTGAAAATGAAAAAAACCAAGTTTCCAGCATCAAACAGTGGTGTAGCACAGAGACTATTACCTTCCTGTT GTCCGGACACTAATGCTGCACAAGTTTCTATTCGGGAGGTCAAAACAACCGATGGGGCTTGTTATTTGACACTAAAGGTGTCAAAGTCGAAGATGCAGCC TAGTTTTTGGAGCTTCTTAGAAAAATATGGCTATCGATATGAGGGTTCAAATATTCGAGCTTTGCTTCCTTGTGAGGCAAAGGAGATTATTAAGAGAATT TCTCATGAGACCAAGAAAAAGCTTGCTGGAAAAGGATATTTTCCTCAAGATGGCTATGTTTTGAAGTCTCTTCCTGTACCACCAAACTGCTTATCAGTGC CAGTGGCTTCAGATGGCATCAGTGTCATGTCTTCGGACCCTTCCATAACAATTCTCAGAAGATTGCTCAGGAAGGTTGAAGTAATCAGAAGCTCTAGATC TGGTGAACCAAACTTTGAGTCTCATCAAATAGAAGCAAATGAATTGCAGTCAGTTTTTGATCAGTATCTTCAAGTAAGGGGCACTTCTAAGGCAGCCCGG GATATAGAAACTCATTATGGGGTCAATAAAGAGCTCAATGAATCATCAACAAAAGCATGGCTTGAGAAAATGAGGACTCTATTTATAAGAAAGGGTTCAG GTTTCTCTTCTCGCAGTGTTATCACTGGAGATGCCTACAAGAAAATTAATGAAGTTGGAATTCCGGTTGAAGTAGCCCAAAAGATTACCTTTGAGGAAAG AGTTAATATTCATAACTTGAGCTATCTGCAAAAGTTAGTTGACGAACATTTATGTTTGACATACAAGGAAGGTGTGTCAACTTATTCATTAAGGGAAGGC TCAAAGGGCCACATTTATCTTAAGCCGGGTCAGATAGTCCATCGGAGGATTATGGATGGTGACACTGTGTTCATCAACAGGCCACCTACAACACATAAAC ACTCGTTACAGGCACTGCAAGTTTACATCCATGATGACCATACTGTCAAAATTAATCCTCTCATTTGTGGGCCCCTTGGGGCTGATTTTGATGGAGACTG TGTCCATCTATTTTACCCACAGTCACTTGCTGCTAAAGCTGAGGTGTTGGAACTATTCGCCGTGGAGAAACAGCTGCTAAGTTCTCACAGTGGTAATCTG AACCTACAACTGACTTCTGATTCACTATTGTCACTGAAGATGCTGTTCAAGACTTGTATTTTGGATAGAGTGGCAGCTCATAGATTGGCTATGTTTCTTA CCCATCCATTGCCTAGGCCTGCCGTGCTCAAAGCCAATTCTGGTGACGCTTGGACTGCCATGCAACTTTTACAGTGTGCACTGCCCTCTTCTTTTGATTG TGCTGGAGGCCGTTACTTGATTAGCCATAGTGATATTGTGGAGTTTGATTTCAGTAGGGATCTTCTGCCAACTATGATAAATGAAATCGCAGCCTCAATT TTCTTTTCAAAAGGACCTCAGGAAGCACTAAAATTTTTTGACGTTATTCAGCCCTTTTTGATGGAGAACATATTTGCTGATGGGTTTAGCGTTGGTCTTC AGGATTTCTCGATATCCCGGGCGCGGAAAAGAATTATTAATAGAAGCATTGCGAAAGTTTCTCCATTGCTGTATCAGCTAAGGTCAATATACAATGAGCT GGTGGCACAACAACTGGAAAAGCACATTGAAGATGTTGAAAAACCTGTTATCAATGTTGCTCTAAAGTCATCCAGACTTGGAGATTTGATTGACTCAAAA AGTAAGTCGGCCATTGACAAGGTGGTTCAACAAATGGGGTTCTTAGGCCAACAGCTTTTTGAAAGGGGAAGATTCTACTCAAGGGAGTTGATTGAGGATA TTGCATCCCATTTCCACACGAAGTGTTGTTATGATGGGGATGGTTATCCCTCTGCTGAATATGGGCTGCTTAAAGGATGTTTTTTTCACGGCTTGGATCC ATATGAAGAGATGGTGCATTCAATTTCCACTAGAGAAATACTTGTGCGTTCCTCGAGAGGATTATCTGAGCCGGGAACGCTATTCAAGAACTTGATGGCC ATCCTTCGTGATGTTGTGGTTTGCTATGACGGGACAGTACGGAATGTTTGCAGCAATTCGGTCATTCAGTTTGAGTATGGGATACAAGCAGGAGATACGA CTCAAAACTTATTCCCGGCTGGTGAGCCTGTTGGGGTCTTAGCAGCAACTTCTATGTCAAATCCTGCATATAAGGCCGTTCTTGATGCTAGTCCAAGCAG CACTTCTTCATGGGAGTTGATGAAGGAAATATTACTCTGCAAGGCCAATTTTAGGAATGAACCTATTGATCGTCGTGTTATTTTGTATTTGAATGACTGC TGTTGTGGAAGGAGTTATTGCATTGAACATGCAGCATATGCAGTTAAAAATCAATTGAGAAAAGTCACTCTCAAGGACATATCAGTAGAGTTCATCGTCG AATATCAACAGCAGCGAAATCGCAAGGACAGTTCTGAAATTGCTGCTGGGCTTGTTGGCCACATTCATCTGGATGAGGTTATGCTAAAGAAGCTAAAGGT CAATTTGGATGAAGTTTTGCAAAGATGCCAGGAAAGACTTAATTCCTTTAATCGGAAAAAGAAAGTAAATCAAATTTTTAAGAGGACTGAGTTGGATTTC AGCGAGTCTTGCTATTGTTCACATCATTCTGCACCATGTGTCAAGTTCCTCTGGCCAGATGGCGATCATAGTGATTTGGACAAAACTGCAAACATCATGT CTGACATAATTTGCCCGGTTTTGTTAGAGACAGTAGTCAAAGGAGATCCACGTATAAGCTCTGCAAATATAATCTGGGTTAATCCAGATACAAACACATG GGTCCGAAACCCCTCCAAATCTCCAAAGGGTGAATTGGCTCTAGATGTCATTCTCGACAAGGCAGCTGTGAAACAAAGTGGCGATGCTTGGAGGATTGTC CATGACTCATGCCTTCCTATCCTTCATTTGATTGATACAAGACGGTCAATCCCTTATGCTATTAAGCAAATTCAAGAGTTACTTGGAATCTCATGTACAT TTGCTCAAGCAATTCAGCGTCTTGCCACGTCAGTAAAAATGGTTTCCAAAGGTCTCCTTAGAGAGCATCTCATTCTCTTAGCAAGTAGCATGACTTGTGG TGGGAATTTGGTGGGCTTTAACACTGGAGGATATAAAGCACTGGCACGACAACTAAACATCCAAGTACCATTTACTGATGCGACACTGTTTACACCTCGA AAATGTTTTGAGCGAGCTGCTGAAAAGTTCCATACAGATTCTTTATCAAGCGTAGTTGCCTCCTGTTCATGGGGTAAACATGTGGCTGTGGGTACAGGTT CAAAATTTGATGTCGTATGGAATGCGAAAGAGATAAAGTCCAGCGAGAATAGAGGGATGGATGTATACAATTTTCTTTATATGGTGAAAGACTTCACCAG TGGAGAAGAAGAAAAAAATACTTGTTTAGGTCAAGACATTGATGATCTGCTAGACGATGAAAATATGGATTGGGGCATGTCTCCCCAACACACGTCTGGT TTTGATGATGCAGTCTTTGAGGAGAACTCTGAACTACCAAATGCTTCAACTTCCAATGGTTGGGGATCAAATAAAGCTGAAGGTGCATCTGAAAATGCCA AGGAGGATTCTTGGAGTTCTGGAAAGCAGAAAACTGATGTTGTCCAAGAAGACTCTTCTAGGTCCAATGCTTGGGATGCCAATACAAAGAAAACAGAGAC GAAGTCTAATGATTGGTTGGCCTGGGGAGGTAACAAATCTGAAACTCAAGATGGCAGTTCTGATACAGCCCAAGAGGATTCTTGGAGCTCTGGTCAGAGG AAAGCTAATGTTACCCAAGTAGATGCTCCTAAGTCTGGTACTTGGGATGCAGACACCAACCAAACAAAAGCAAAGTCAAATGATTGGACGGCATGGGGAG ACAAGAAATCTGAAATACAAGATGTCGGGTTTAAAAGAGCAGAAGAGGATTCTTGGAGCTCTGGTAATAGGAAAGCCAATGTTGCCCAAGAAGACTCTTC TAAGCCCGGTGCATGGGATACTAACACCGACCAAACAAAAACAAAGTCGAATGATTGGTTGGACTGGGGTGGAAAGAAATCTGAAATTCAAGATGGTGGG TCCGGACGAGACCAAGAGGATTCTTGGAACTCTGGTCAGAGGAAAGCTAGTGTTATCCAAGATGACTCTTCTAAGCCTGGTGCTTGGGATGCAAAAGCCA ACCAAGCAAAAACAACATCAAATGAGTGGTCAGGGTGGGGAGGAAAGAAATCTGAAGTGCAAGGTGGTGGGTTTGAAAGATCCCAAGAGGATTTTGGGAG CTCCCGGAAGTGGAATGCTGAATCTAAGGTTGGATCCAAAGTTATCCAAGAAGAAGCATCAAGGTCTAATGCTTGGGATGCAAATACAGACCCGAAAAAA ACGAAGTCAAATGATTGGTCTGCTTGGGGAAGTAAAGGTGAAATACAAGATAGCAGGTCAGAAAGATCCCAAGAGGATTCTTGGGGCTCTGCTAAGTTGA AAGCGGAATCAAATGTTGGAGCTGATGTTAGACAAAAAGACTCTTCTAGGTCTAATGCTTGGGAAAGTAATTTCAACAAATCCTCAGAAAACCCAGCATG GGGTTCCCAAAATGAGTCAAATCAAGCTGCAAGTTCCCAAGGATGGGACTCACAAATCGCTTCTGCAAATTCTGGCCGTGACAAAAACTTTCAATGGGGA AAATCCAAATCCTCAGAAAGCCAATCATGGGATTCCCAAAATGAGTCAAATCAGGCTGCAAGTTCTCAAGGATGGGACTCACAAGTCGCTTCAGCTAATT CTGACAGTGACAAAAGCTTTCAATGGGGAAAGCAGGGCAGAGAATCATTCAAGAAAAACCGCTTTGAAGGTTCGCAAGGACGCGGTTCAAATGCAGGTGA CTGGAGAAATATGAATCGCCCCCCCAGACCACCACCTCCAATGTACACACCCGAGGAACAGGAAGTTCGTAAGGATATTGATTCTATTATGCAGTCAATC AGACGTATCATGCAACAAGAAGGGTACAATGATGGGGATCCGCTAGCAGCAGAGGATCAAGCATTTGTGCTTGAGAATGTCTTTGAACACCATCCAGATA AGGAAACCAAAATGGGTGATGGAATTGATTATGTCATGGTTAGCAGACACAGCAATTTTCAGGAAAGTAGATGCATGTACGTGGTTTTAAAGAATGGTAA AAAGGAGGACTTTTCCTACAGGAAGTGCCTGGAAAACCTAGTACGGAAGAAGTATCCAGACGTTGCAGAATCGTTCAACGACAAGCATTTCCGGAAACCT CGTGGAAGAGCAGGAGGGGACCAGGCCACAACAACTCCATTGCCTACTTCTACTGAAACAAACCAGGCACCAAGAACTCCATTGCCTACTTCTACTGAAA CAAACCAGGCTGCAATATCATCATGGCCTACTTCTACTGAAACAAAGCAGGCTCCAACATCATCATGGGCTACTTCTACTGAAACAAACCAGGCTGCAAT ATCATCATGGCCTACTTCTACTGAAACAAAGCAGGCCCCAACTTCATCATGGCCTACTTCTACTGAAACAAAGCAGGCTCCAACATCATCATGGCCTACT TC BLAST
Tissuepods
Gene nameLI_gene_189195; 
Additional informationdetails; 

Expression of Ll_transcript_397892

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_397892

BlastpDNA-directed RNA polymerase V subunit 1 from Arabidopsis with 47.72% of identity
BlastxDNA-directed RNA polymerase V subunit 1 from Arabidopsis with 51.46% of identity
EggnogDNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity)(COG0086)
KeggLink to kegg annotations (AT2G40030)
CantataDBLink to cantataDB annotations (CNT0000674)
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019449371.1)
PfamRNA polymerase Rpb1, domain 1 (PF04997.11)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;