| Id Trinity | TRINITY_DN52025_c3_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_473034 |
| Sequence | GAAACAACAGAAATTCTAAGGAAGAAGAAGAAAAGAGGAAACATAGGAAGAATCAGAAACAGAATATAAACCTTAAACCTATTTCATATCAAAATTACGG TTGAATGTTATTTGCTCCTCTTCTTCTGCGCAACCAATAACAACAATAAAAAACGAAGCCCTCATCTTCTCTCTTTGTTATATTCCTTTTGTTCAATCAC TTCCCAACTTGTTTCATCTTCAAATTTATCATCTTTCCCTAATTTCTGTTTCTGGGGTATTCCTCAATTCTCACTTTCTTCATTCATTGTATACCATCTT TCATGTTTTCTATCTAATCCTAGAACCTTGTCACAATCGTTTAGGTAATTTGGGGCATGGACTTGCTGTTTATGCCCCTGTCAGTGTCTGTGAACAATGT TTAGCAGACCGAGAGATTCAAGTGCTTTCAGTATATTCAAATGGAAACGTCAGAATGAATCATCAGTCACTACAGGTTTACTTCAGGATGATCCGTCCGA GATTGAATTGTCTGATTATAGAAGGACCCCGAGTCCAGGTAGTGAGAGCCCTTCAGGGCTTCTTAATGGTGAAAGCCTAAATGCAGAACCAATTGCTGAC TTGGATCTCTTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGGTGCATCATTATAAAGTGGATCGTTGAACTTTCGAGTCTAGTGTTCA CCATATGTTTTTCGGGATTCTTTTTATTATATGTTGATTGGAATGGCCTTCGTAATGCAAAGTGTGGGATGGGTGCAGTTGAGTATGGAATCAAGCCCTG TGATCTTGCTAAAGAAGCTCTTCATCAACACCCTTTGACTCCATTAACACCTAAGAAAGTTATTATTGTCGGATACTTGGGAATATTTTCCATCTATTGG ATATTTTGCTTCTTGAGATTTTTCGCTCAACTAAAGTGTACTCTGGGAATCCGGCAGTTTTACTACAATAGTCTCCATGTTACCGACAATGAAATTCAAA CCATGCCCTGGGCTACAGTTATTGAAAAAGTTGTCCAGATGCAAAGCTCGCAACAACTATGTGTGGTAAAGGATCTTTCTGCTCATGACATGGTGTTGAG GTTGATGCGGAAAGAAAACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGCGTTCCCCATTTCTCAGTGGGTCCCAGGTGTTGGACCTACTGTGAAA TCTGGTCCTAATGGAACACAATATCGTCTAATACTAACCAAGACCCTTGAGTGGACTTTGAATTGGTGCATCCTGCAAAGCATGTTTGATCGAAACTTCT GTGTCAGAATGGATTTTGTATCAAATCCAAGGACATTGAAGAAAAGGCTTATGGTAGTTGGGCTTGCAATGCTTTTACTCTCTCCATTTATAGTCATATT CATGCTGGTATATCTCTTTCTGAGGCATGCTGAACAGTTTTATAATCACCCAAGCACAGCATCCTCTCGAAGATGGTCAAATTTGTCAAGGTGGATCTTT AGGGAGTTCAACGAGGTGGACCATCTCTTCAAGCATCGGATTAATAGCAGTGAATTACATGCTTCTGATTATCTCAAGCAATTTCCTTCACCTATCATAT CTATCACTGCAAAATTCATCTCCTTCATGTCGGGTGGTTTTGCTGCAGTTCTGATCATCATTGCTTTTCTTGAGGAGTCTCTGCTAGAGGGTCACGTAAT GGTTTTTCCATCGCTTTTCTGAATATAAGTTTTACAAACACGTAATGGAAGTCATTAGTAATAATTTTTCTTCCTTTATTAATCAAAAAACTAATGCAGA TATTTGGTCGGAACCTGCTGTGGTATGCTGCTGTTTTTGGAACTATAACAGCAATTAGCCGGGCTGCTATCACAGATGAGATTCTCGTGTTAGACCCTGA AAGAGCAATGTCTATGGTAGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGAAAAGAAAGTACTGTAAATGTCCGAATGGAGTTTGAAACCTTA TTCCAAGTATTATGATCAGCTTTTTCTCTGATACGTCTACATTAAGCTAGACCCACCCATATGTGCTATTTGTTGTCTACACGATATATCGTGTTTGGCT TATATATAATAGGTTTGAAACTAGGAATGCTACTTATTCTTCTATGTGTTTTAATGGTGCAGTATACTGGGATGATGTTACTTGAGGAGATGTCATCAAT TTTCCTTACTCCATACTTACTTCTATTTGTTGTCCCGAAGCGGGTTGAAGATATCTTGCAGTTCATTGCAGATTTTACTGTGAATGTTGAAGGTGTAGGT CATATTTGCAGCTTTAGCAACTTTGATTTTCAAGAGCATGGAAACAGTAATTATGGCTCCCCGCACAATGCTCCTCACAGCCGGAGGAGTTCCTGGGGGA AGTTTGAGAAGTCGTTTTTGAGCTTTCAGAGCAGTTATCCTTCATGGGAATCAAATGCTCAAGGTAAACAATTTTTGCAAAATCTGAGAACCTTCAGAGA GCAAAAGTTACCGGGACATGTAAACAGATATTCATATTCCCCTCCTAGGATGTGGAAAGGTAGTCCCAATATGGAAAGCAATGAAGACAGAAAAAGGTTT ATATCTCGGGAAATGTCACATCATACTTTCGAAACTGGCAATCACTTGGGTTCCTTGTGGCTAATTGAAGCCAATCAAAACAATCACCCCTATCTTCTCG ATTGGTACTATACTTCCCGATCTCACGATGTGACTTCCAGAGAGGTTCCAATTCCGAATGATCCATTTGATGTTAATGATTGTCATTCTGGAGTTTGGAT GCGCTCAAACTTGACAGAGAATGAACCTGGGTATGATGAATACTTGAACGAGTATCATGATGATAATCGAGCTGCTTCTTATCTCGGAGCTTCCATATCA GCTCCCATCTTCAGGGAAAGTTTAATTCAGGATCAAAGTTCCAATGATCAGCCCCACACTACCAGGAGCCATTGGTGGGCTAGAAGTCACCACCAGGATG AACCGGGTCAAACAAGCTTCTTCGAGCCTCCAGATTTCAATCAGCAAACAACAGCATATAATAACTACTATGATAAATTTTCTGATAGAGGAGGCTCAGA GGGTCATCATGATCAGGAACAATTGTATAGGAGAGATGAGCACGATTTATCTAGAACAGCATTCACAAATGACTTAGAAGCTGGAGAATTCTATCTTCAT TTTGATGATATTTATAGCAGCAGGCCTCCACAAAATCCCACTGTAAATTCAAGCACTACAAGCTTTTGAATGATGCCTTTGTCCTACATAATTGCAAGAG TTTCATAGTGATGATTGCCCCTTCTATTCCATGGAAAGGGGAATTTGATTCTTTGTTGTAAATAGACTCATTGACTGTGATTAGATTGTTGATGAGCCTC AGTTTGTTGTTTAAGAACCAAATGTTTCTTCTGCTAAAAATCATTCATGGCATGCAGTTTTCTAATTCTTCACCTACTTTTTTTGTACTTCATTTTTTTA AGGGTTCAATTTAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_189457; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_473034
| Blastp | Autophagy-related protein 9 from Arabidopsis with 79.54% of identity |
|---|---|
| Blastx | Autophagy-related protein 9 from Arabidopsis with 79.54% of identity |
| Eggnog | Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE) |
| Kegg | Link to kegg annotations (AT2G31260) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019434383.1) |
| Pfam | Autophagy protein Apg9 (PF04109.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |