Ll_transcript_307042

• Id Trinity: TRINITY_DN52248_c0_g1_i35
• Name Transcript: Ll_transcript_307042
• Sequence: TATGTACTAAATGCTAAACTGATCGTGCACATCCCTCTGCTGAGTCTGCTCTGTCTCTATTTCCTTGTCCTTATCTCTGAAAGAACCTGGGACCCAAACA CAAAATCCCGAATTTGCCCCTACCCAATTTGTCTTATAATATATATGGAAAAAATCCAACGTTACTGGCTTGAAAATATTATCATCATATATAAATAAAT AAACGAAAAACATGTTGCTTAGTTTTTGAATTGCGAACTGTTACGGCGGCGATGGAGGTCACCGGCGGAAGGAACAGACGGTGGGAGGTGGCGGCGGTGG ATCTCACAAAGGCGGCGCAGGAGAAAGGGAGTGATCCTCTGTTATGGGCGATTCAGATGTATTCGAATTTGAATTCGGCGGGAGAGTCGTTACCATCTAT TGAACTCGCTGAGTTTTTGGTTTCTTACATTTGTTGGGATAATAATGTTCCTATTCTGTGGAAGTTTCTCGATAAAGCTCTCATGCTTCAAATTGTTCCA CCTTTGCATATTCTTGCTCTTCTCTCTGTTAGGGTTCTTCCATGCAGGCATGTCCAACCTGCAGCATATAGGCTATATTTGGAATTCATCAAAAGACATG CTTTTGGTCTTAAATCTCAGACAAACAGGCCAGATTATCCGAGGGTCATGAAATCTATAGATGATGTTCTTCATCTTTCCCACATATTTGGCATGTCACA AAGTGAGCCTGGCATTCTGGTGGTTGAATTTATTTTTTCACTTGTCTGGCAACTGCTTGATGCATCGTTGGATGACGAAGGGCTGCTGGAACTTTCACTC GAGAAGAAGTCTAAGTGGGCAACACTATATCAAGAAATGGATCTGGACATGCATGATAATTATAATGATAAGAAGTCTGGACATCATGAGAAATTGAGAA ATGCAAATACCCTTATGGCTATCGAGATGATTGGGCAGTTTTTGCAGGATAAAATATCTTCAAGGATTCTTTACTTGGCTCGCCGAAATTTGCCTGCACA TTGGCTATGTTTTGTTCAGAGGTTGCAGCTGCTTGGAACAAATTCATTAACATTGAAAAAGTCAAGAGATTTAAGTCCTGAGGCACTTCTGCAACTGACT TCAGATACTTCTGTGGTCTTGTCTCGAGAATGCAAAACAAGGTCACAACAGAAGTTCCATACAGTTATGGATTTTGAATATCTTTCTTCTTCAGCATCAC TCTGCCATGGTGCAACTCACTCTGCTCTTTGGATTCCTCTTGATCTCGTGCTGGAGGATGCCATGGATGGATATGAAGCTAGTGCAACAAGTGCTATTGA AATAATAAGTGGTTTGATAAAGACTCTCCAAGCCATAAACAGAGCCTCTTGGCATGACACCTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTGTTCAG AGGGAAAGAGATCCTATTGAGGGCCCAATGCCTCATCTTGATACTCGCTTATGCATGCTCTTGTGCATAATGCCTCTTGTTGTTGCTGATCTTATTGAGG AGGAGGAGGAAAGGACACCAATTGATGAAATAGAAACAGACAGTGGTCCTACAAATAACTGGAAAGAGAAGGTTCCAGGAAAGCGTCGCAGTAATTTAGT CACAAGTCTGCAGGTATTGGGCGATTATCAGAGCTTGCTCACTCCACCTCAATCTGTTGTGTCTGCTGCGAACCAGGCTGCTGCAAAAGCAACGCTCTTT GTTTCTGGCTTCTCAATAGGGAGTGCATATGTTGACTGCCTCAGCGTGAAAGAGATTCCAATTAACTGTTCTGGAAACATGCGCCATCTACTAGTTGAGG CTTGTATTGCTCGAAATCTACTCGACACATCAGCATATTTATGGCCAGGTTATATCAAGGGACATATCAATCAAATACCTCAGTGTATGCCAGCTCAAGT ACCTGGTTGGTCATCATTTATGAATGGAGCACCACTTACTTCAGAGATGGTAAATGCTCTGGCTTCAAGTCCTGCTACATGGTATGTCAGATGCTCTTTT TTGTAAATTTACCCAAAGGTAAAGCAACTGAACTTACGCTCCTGGATTTAATGGAAGCTTAGCAGAACTGGAGAAAATGTTTGAAATTGCAATTGGGGGA TCAGAAGACGAGAAGATATCTGCTGCTGCTATTCTTTGCGGGGAATCCCTAATTAGAGGATGGAACATACAGGAGCACACTGCTCATTTCATTCTTAGGC TATTATCTCCACCGGTTCCTCTAGAGAACACTGAAGGAAACAACCATTTGATTGATTATGCTCCAATACTTAACGTACTCTTTGTTGGAATTGCATCTGT TGATTGTGTTCAAATATTTTCGCTTCATGGTTTGGTAAGTTCAATTCAAACCCTAATTATAAGTCTTGTCAAACAATGTTATAATTTTTTCTCTTCATAC TGAAAATTTCTATAAAATTGAAGATACTTAAAGTGATGGATGAAATAAAAACATTTGGCCTGTCATTTGAGTTTTAATGGATGTTGAATTCAGGTTCTTA GCTTTAATTGCTGTAGGAGAAGAATAACTGTCCAATATAAATGACGTTACTCAAGTTGAGATTGTTTTGCATACATTAGAATATAGTGTCTGTGTTGATT GGTTTGGTAATGTCCTGAATGTGGATTAGAAAATTTGTTCCACGGTTTGTTTGTGTTCAGTTTTTTCATGAATGTCGATGTAGAAGAGAAAGTGCATGAC AATTACCTATCCTGCTTATGACCTGCACAGTTGTATATAACATATCATATTTTTTTATATGTAGCACATTAGTTATTATATATGCAGTTAATAGATTATT CTGAATAAAAAAATATTAGGTTTAGGGAGATAAAGCAGGTAAAACAAGGGAGGAGTGCTAGGATCAGACTCTAACACACTCCTATCAACACACTCCAAGC TATTGATCCACATTCCCACTTTTTAAAACATGTCACCTGATAACCTGCCTTCCCAGTTTACACATACTTCAAACTGTAACCCCCTCACTCGTTCGAAGAG CAACAATTACAGTTTGTTAGATTCACTCTAGGAACTTTATGGGCAAATAATCAATTCAACTGAACCTTCTCCAGGAGCAATAGGCGTAATTTGACTAATT TCCTCTTTAATTGCCATCCTGGCCATCACTAATAGAAAGACCAATTTTTTTTTCCAGAGCCTGGGTGTAATTCCAAATCCTGATCATATCTTACCCAGAT AAGATAACAGGAAGGCCTTGCACCTAAATCGGTGTCAATTGCACAATCCCCCTGCCTTTCAACTTGTTCAAAACCAGCTTCGAAGCCTCATATCCTTAAC ACAGTTGAGGGCAATTTATATTCCTAAGGGTTTTTCTTAGCTAATTCATCAAAATACTTAAGGGTTTTTCTATCACACAATTTCCCAATCAGCTCTTTCT CCTGTTGAACAATCTTTTCTGTCACAATGATCTCATGTTGCTCTTCGTATGAGTTTGTAGAAGATTAAGGTTTTAAGAGTGGGTGATGTGGACCAATAGC TTGGAGTGTGTTAGAGAGTATGGTCCTAGCACTCCTCAAAACAAGAAAGGAATTATGCATTCTCACTTAAATGCATCCTTTCTATTTTCATCTCTTTTTT GTTCTATTTTACTTTTATGATAGTTTGAATTAGTGCATTTCCCAAATCTACCAACAGGTTCCGCAGCTTGCATGTTCATTGATGCCAATTTGTGAAGTTT TTGGGTCTTGTGTGCCTAATATTTCATGGACACTGACATCAGGGGTGCAAATATCTGCCCATGCTGTGTTTTCAAATGCATTTATTCTTCTTTTAAAGCT ATGGAAATTTAATCGGCCCCCTCTTGAACATGGAATTGGAGATGTACCTACTGTTGGTTCTCAGTTAACTCCTGAATACCTACTATTAGTTCGAAACTCC CACTTAATGTCAGATGGTAACATCCACAAAGATCGAAACAGGAAGAGGCTATCTGAGATTGCAAGTTTATCATCACCAAATTCTGTATTTGTTGACTCCT TTCCAAAATTAAAAGTCTGGTACCGGCAGCATCAAGCATGTATAGCTTCAACACTGTCCGGTCTTGTTCATGGAACCCCTTTTCATCAAATTGTTGATGG GCTTCTTAACATGATGTTTAGAAATATTAGTAGAGGGGACCAGGTTACTATTGTATCTGGAAGCAGTAGTTCTTCTGGACCTGAAAATGAAGATACTTTT ATAGGGACAAAGTTGCCTGCATGGGATATTTTGGAAGCCATTCCCTTTGTTGTTGATGCTGCTGTCACAGCCTGTGCTCATGGAAGACTGTCTCCTCGTG AGTTGGCAACAGGGCTGAAAGAATTAGCTGATTTTCTTCCTGCATCATTGGCAACTATAATAAGTTACTTCTCTGCTGAAGTAACTCGAGGTGTTTGGAA ACCTGTATTTATGAATGGAACGGATTGGCCAAGCCCTGCTGCAAATCTATTGAACGTTGAGGAACAGATCAAGAAGATTTTGGCTGCGACTGGTGTTGAT GTGCCTAGCCTTGCTCCAGGAGGCAGCTCACCTGCCACACTTCCATTGCCATTGGCTGCTTTCACAAGTCTCACCATAACCTACAAAGTTGACAGAGCAT CTGAGCGTTTTCTGAATTTGGCTGGCCAAACACTGGAGTCCCTTGCTGCAGGTTGTCCATGGCCTAGCATGCCAATTGTGGCTTCCTTGTGGACCCAAAA GGCAAAACGTTGGAGTGACTTCCTTATCTTCTCAGCTTCTAGAACAGTCTTCCTCCATAATAGGGATGCAGTTGTTCAACTTCTTAAAAGCTGTTTCACA GCTACCCTTGGCATGAATAGCTCTCCTATCTCAAGCAATGGTGGTGTTGGAGCCCTCCTTGGCCATGGATTTAAGTCCCATTTTTGTGGAGGGATGTGCC CTGTTGCTCCAGGAATTCTCTACTTACGTGTTTATCGGTCAATCAGAGATGTTGTTTTCTTGACAGAAGAAATTGTTTCCATCTTGATGCAATCTGTGCG AGAAATTGTATGTAGTGGTCCGTCAAGGGAGCAATTACAGAAGTCGAAAGCAACCAAAGATGGCATAAAATACGGACAGGTTTCACTTGCCGCAGCAATG ACTCAGGTGAAACTTGCAGCTGCTCTTGGGGCTTCTTTAGTATGGCTATCTGGAGGGTTGGTGCTGGTTCAATTATTAATAAAAGAGACTTTGCCCTCAT GGTTTATATCTGTTCACAGATCAGGCCAGGAAGAAAAGTCAGACGGAATGGTTGCAATGCTTGCTGGATATGCACTTGCTTACTTTGCAGTGCTTAGTGG GGCTTTTGCTTGGGGAGTTGACTCATCATCATCGGCTTCAAAACGACGTCGAAAAGTCTTAGGTGTCCACATGGAGTTTCTGGCAAGTGCACTCGATGGA AAAATATCACTTGGCTGTGATTCAGCTACTTGGCGAGCCTATGTGTCAGGGTTTGTGAGCCTGATGGTTAGTTGCACGCCAAACTGGGTGCTAGAAGTAG ATGTCGATGTGTTGAAGAGACTGAGCAATGGCTTGAGGCACTTGAATGAAGAGAAGCTTGCACTTGCTTTGTTGGGTAATGGTGGGGTTGGTACTATGGG TGCTGCAGCTGAACTCATAATTGAAAGTGGAAGGTAAGCTTATTCTCCAGCACCTGTGCCTTTTAGTATGCTTATGTACAGTAGTTTCATGTTTAAAAAC TTGTGCAGTGCTAAATCTCCTCTTTTGTTTCAAAAGCATCACTTATGAGAATGGAAAATTTTGTATCTGAACTATGCTCAATCTAAGGTAACTTTCTTTC ATGTTTGAAGTGATGAAACATTGCATAGGTAAAGATATGTTAAGTTTTTTATTCATTATTCTGGGGGGAAATAAAACTACCAACTATTTATGAATCTATT AGTATTTTATTATTATATCACTCCATTGCTAAGGTATATAAGTGATTTGAAATACTGTGTATAAAGTATAATCAATGAACATAGTATTAGACTTGGGTAC TATTGTGTCTGAAATGTGAATGGTATTAATATATTTCTCCAATTGTTTCTAGCACAACTTTGCTAATTAGCAAAAGCAAAATTATTTTCTATTTCCACTT TTCTTTCATTAGTTTTTATTAAAAAACTTACTATTTTGAAGTTATCAAC
• Tissue: pods
• Gene name: LI_gene_191231;
• Additional information: details;

Expression of Ll_transcript_307042

FPKM

• PAB: 0.5
• PNAB: 1.2
• PS1: 0
• PS2: 0.2
• PS3: 0.2
• PW1: 1.1
• PW2: 3.6
• PW3: 2.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_307042

• Blastp: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 69.89% of identity
• Blastx: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 68.92% of identity
• Eggnog: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator(ENOG410XPER)
• Kegg: Link to kegg annotations (AT3G23590)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425895.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;