| Id Trinity | TRINITY_DN52268_c2_g3_i2 |
|---|---|
| Name Transcript | Ll_transcript_304739 |
| Sequence | TGTTTTTAACTCGGCCACTATTGAATTTTTAGGCTCAGACCATGACAAAAACAATACTCTAGAGAGTGCATCAGCAGCCAAGTTGTCTTTTCCTGGCTTG TACTCAATGGTGAAGTCGTAGCCTAAGAATCTATGGAGCCACTTTTGTTGTTCTGGGGTGTGCAAACTTTGCTCCATTAAACTTCTTAAGCTTTGCTGAT CGGTGCGAATAATAAATCTATGACCCAATAGATAGTGTCTGAACTTCGCAATTGCTTCAGCTATGGCCAGCATTTCTCTAAAATAAGCAGACTTTTGTTG AGTGCGTGGTGCAAGTTTCTTGGAAAAATAGGCAATTGGGTGGCCATTTTGGTGTAACACTGCGCCTATGCCAACCCCCGAGGCATCGGTTTCTAAGATA AATGGTTGTTTGAAGTTTGGCAGCCCAAGAACAGGTGTTGTTGTCATGGTTGCCTTGAGTGTTTTGAAGGTTGTGTCCGTGGCCTCAGTCCACACATAAC CATCTTTCTTGAGTAATTCAGTTAGAGGAGTAGCAATGTTGGCATATGCTTTGATAAAACGTCTATAGTAGCCTGTGAGACCCAAGAATCCTCGTAATTG ATGCACATTTGTTGGTGTTGGCCAATCAAGGATTGCTTGAATCTTGCTGTTAACCATAGAAACACCTTGTCCAGAAACAATGTGACCCAAATATTCAATT TCTAGGACACCAAATGAACACTTGGATAATTTTGCAAACAGCACATGTTGTTGAAGAACCTGTAGCACATTTTCCAAATGAGTCAAATGGTCATGCCAAG TAACACTATAAATGAGTATATCATCACAAAAAACAAGCACATATTTTCTTAAGGCCTCCTGAAAAACCTGATTCATCAAATTTTGAAAAGTTGCGGGAGC ATTGGTTAAGCCAAAAGGCATGACTAACTATTCATAGTGACCATGGTGGGTTCGAAAAGCCGTTTTATGCCTATCCTCTGGTTGCACCAAGATTTGATGA TACCCTGACCTTAAGTCGAGTTTTGAAAAAAATTGGGCACCATAAAGCTCATCCAATAATTCATCGACAGTTGGTATAGGAAAACTGTCCTTTATGGTGA CAGTATTTAAAGCTCGATAATCCGTGCAAAATCTCCAGCTACCATCTTTCTTTTTCACAAGTAGAATTGGGGAAGAGAAAGGACTGGTACTAGGTTGTAT GATACCTTGGTCTAGCATTTCATGCACCATCTTCTCGATTTGTTCTTTCTGGCTATGAGGATAGCGATATGGCTTGATTTTGACAGGCTTAGTACCTTCC AAGAGTGGAATAGCATGATTTTGGTTGCGAGGAGGTGGTAAAGATTGAGGAGTTTGAAAAACTGAACTGTATGTGTGCAATAACTGAGTAATCTCAGGAG CTAGATTCCGTGGTAGGTCTGTCATGGTATCATCTTCCGTATGTAGATGAAATAATAGAATTGTAAAAGATTTAGCTATAGCATCTGTGTGGGCTAGCCT TTTACAATGATGAAACTGTGTTTGCCTAGGTGTTGTGCTTCTTTCACCTTGTAATGTCACAAACTGCCCTTTGCAGAAAAATTTTAAAGTCAAAGCTGCA TAATCAGCCACATGTGGGCCTAATGTAGCCAGCCAAGAGGCCCCCAAAATGATATCTGCACCTGCCATAGGGAGTAACAACACTGGTAGTATCAATTCAT GTCCTTGTACTGTGAGTGACTATTGCGAAATCATGCCCTCTGCAGTCATAGTTTGGTATTTCCCACCAAAACTTTTAAACCCGGTCCTGGCTCCACTGGT AATTTGAGAAATTCAGCAATCCTTGGTTGAAGAAAATTGTCGGAACTTCCACCATCGACTAAGACCTGAGCACTAATGTTTCCAATCTGGCCTGTAAATC GCAGGATGCCTGTACCACTGGTCCCTTTCATGGCATTTAGGGACAGATGGTGGTCATTTGTGGTAGGGTCAGGGTCAAGTGAGGTGATATCTAGGTGGGG AAAGTTAAGATTGGGTGGGATATCATCTTCACAGTCATCAAATTGCAACATCATGACTTGGCGATTTTGGCACTTATGGGTTAGGGAAAATTTATCATCG CACCAATAGCATAGACCCTTTTCTCTTCTTAATTGCATTTCGGCTGGGGAAATTCGTTTAATGTTTGGATTTCTTTGGTTGGGGTGCATAGGTCTGGTTG GTGGGGTTGGAAGGAGAGGAGTGTGAGGTGTTTTTTGGTTAGTGGCTGTTTGATTTGAATTGAAGGGTGCTCTGTGGTTATAGGAATTGGCATATGTGGC TTTAGGTGGCTTAACGGATGAGGAATATTTTTCTTCATAAACTTTGGCAAGTGACACAGCTTTAACAATTGAAATGGGTGTGTGAATCATCACATCCCGG CGGATCTCTGGAATTAACCCACTAATGAAACAATCTATGAGAGCATCATTACTCAAGCCATAAACTCTGTTAGCTAGAGAAGTAAATTGTAGATAATAAT CAGCTACAGTCCCAGATTGGGTTAATTTGAATAGGGTTGCTCTTGGGCATTCATAGATCGATGGTCCAAAGTCCAATTCGAGGGCCCGTGTGAATTCTAC CCAAGATTGGAAGGGTTGGGAACGTTGCATCATCTGAAACCAAGGGACAACGTCCTTGTCTAAGTGCACTGAAGCTATGGTTAATCGATCCCTATCCAGT GTACCATAGTAATCAAAAAATTGTTCCGCACGAAAGATCCATTCTAACACGTCATTGCCATCAAAACGGGGAAATTCTAGTTTAATGTTTCTCACCTGAA AGGCTTGTTTGTGTGAGTGGTCGGCACCATGGGGAGATTTTTGGGAATTCTGATTCAGCAATAACTCAAGCGCATTGTTGATCTGCGAAAATTGGTTGTC GGTGTTCATCTGCATTGCTTCCAAACGTTCAAAACGAGTGGAGTTTGCAAGTTCCAATCGGTCCAGTTGCTGATGGAAATCACTGTATAATTTTTCAATT GCTTCAGCATTGCGCTTGACGTCAGAACTGAGCTCTTTCATCCTGGTATTTTCTGCCATGGTGAGATGAAAGCACCAATTGTAATGAAGCAAATAACGAT AATGGATAATAGTACTTGGATATATTGAATTATAGTCACTTCCAATATATGCTATAGAAGGAAAGTGAGAGTACAGTAGTGATGTTTAAAAAAAACAGAA GAGAGACTTGGAAGAGGAAAAGAAAGGAGATAATTCTCATTACATTCATATCCTTAAAACTACTCTTATTCATTATTATATACTAAATCAGGCAGACACA TATTCCTTTAGCCTTGTGCTCGTCCCTTTTCTTGGCACCGTAATATCCGGATCTATTCTAACAACAATATTTCCTTCATGTGCATGTGGGTCCTTTGTAG TGGACCTGGCTGAGAACGTGCCTCTCCTATTTTCATTCTTTTCCACACCTTTGTTTGTATGTGTCTGTGGGTCCCTCATTACATATGACTTGGGTTTTTT GCGATTTTGGGCTTTGAACTTTTTAGATTATAATCTATACTTCTATTTCTTTTTTTTGCAGGAACCAAATTATGAGGATCCATTGAATCATGATGTTGCT GCTGTCTTGAGAGAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_191385; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_304739
| Blastp | - |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon 297 from Sophophora with 44.5% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0002914) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_014627597.1) |
| Pfam | Retrotransposon gag protein (PF03732.16) |
| Rfam | - |
| GO | - |