Ll_transcript_348569

• Id Trinity: TRINITY_DN52420_c0_g3_i7
• Name Transcript: Ll_transcript_348569
• Sequence: CCGTACCATGCCCTTGGAGCTTGTTTAAGACCATATAATGTCTTCTTGAGCTTGTAGACTTTATATTCTTCTCCTTTCCTCTCATAACCTTGTGGCTGCT CCACAAAAACATCCTCTCACAAGTCGTGCTTTGCATTTGTCCACTGCCCCATGTTCATTAAGCTTTGTTTTAAAGACCCATTTCACACCAGTTTTCTTAG CTCCAGGAGGTAGAGTAGTTAGCTCCCATGTGTCATTTTTTTCAATAGATTTTATTTCTAAGTCCATAGCTTCTTTCCACTTTATGCTTTTCATAGCCTT TTGAAATGTTATAGGATCGGCAACAACAAACATGACAAAATTGTCAACATCTTCTTCAGATAAATCTAACCCCTCTCCAGTGACATAATCTTCCATCCAA ATTGGAGGCCTCCTGTTCCTTCCTTCATTTTAGTTTGGTGGACTTTGATCTAAAGACTCACTTGAAGATGAAGTGACTTGACCTTCTTCATCATGCTCAC TATTCTCCTCTTCATTGCCTTGATCAGATTCATTTTGTTCATCTTCATCTCCCAATTCTAAAACATCAAGCTTCACTTCTTCTATTTTTCTTCCCCAATT CCAACTCAAATTCTCCTCGAACACTACATCTCTACTAACAACAATGCAATTAGATGCAGGATCATAAAGCCTATAGGCCTTTGATTCTTCACTCACCCCC AACAATACACACTGAAAGCTTTTATCATCTAATTTTATTCTCTTCTTGTCTGGAATGTGTACATGTGCAACATATCCAAACACTCGAAAATAGCCTACTG TAGGTTTGACACCACTCCACTCTTCTTCTGGGGTGACATCCTTCACTGCCATGGTTGGACTTCGATTCAACACATGCACACTCCAATTTGCAGCTTCTGG CCAAAACACCTTAGGCACCTCTTTTTCAGACAACATACTTCGAACCATATTCATTATAGTTCGATTCTTTCGCTCAGCCACCCCATTTTGTTGAGGGGTA TGCGCTGCTGTCAATTGCCTTTTAATTCCATTCTCCTTACAAAAATTATTAAACTCCAAAGAAGTAAATTCACCACCCCTATCTGTGCGCAAGCATTTTA TGGAATCACCAGACTCTTTTTCAACATGCTGTTTAAAATTCTTAAACACCCCAAATGCTTCTGATTTTTCACATAAGAAATAAATCCAAATTTTTCTGCT AAAATCATCAATGAAAGTAATCAAATACCTCTTTCTAGAGTTTGAATCTGGTTTGATTGGCCAACAAATGTCTGCATGGACCAGCTGAAGCCTTTTGCAA GCCCTCCATGAACTTGTCTTTGGAATAGTGTTTTGATGTTGCTTCCCCACTAGGCAATCTGTACATAGCTTGCTAGGAGTCTTAAGTGTAGGTAACCCCT TCACCATCTTCTTATATTGCAAATCTTTTAAGCTCTTGAAATTAATATGACCATACCTACAGTGCCATAAGTATGATTCATCTTCTGAAGTAGTTTGAAA GCAGGTAGAGTCACTAGGCAACATTGTGGCTTGGAGCACAAACATTCGGTTCACAGACATTCTTATCTCTATGATTAGGCCTCTCTGGATGATACAATTT GCACTTTCCTCCCTGGATCAAGATAGTTAGACCCCTTTCTTGAAGTTGCCCAATGCTAAGCAGGTTGTTTTTCAACTCTGGTATGTAGAATACATCTGTG ATCACATGTTTTATCCCATTAACCTCCAATCTAATGCTTCCTTTTCCAGTGACCGTCATCTTAGAATTATTCCCGAGCTTTACAGATTGTCTAAAACTGC CATCAATGTGTGAGAACCATTTCTTGTTCCCACACATATGGTTACTACAACCTGAATCAAGAAACCACACATCCTCCCTTCTAGAATCTTGAAGTTCCAC ATGAGACATTAGTAACATCTCATCTTCTTCTTCCTTCACTTCAGCATAGTTTGCATTCTTTTCCCAAGTAGGACATTCATATTGAAAGTGTCTTAGTTTA TGGCATTTGTAACACTCCACAATTACTTTGTTGAATGCTTGTCTTCCTCTACCTCGACCTCGTCCTCTGAATGATCCTCGTCCTCTTCCTCTATGCTCAT GACCTCCATGCCCCTTCATTCTTTGCTCATGGACTAAGAGGCTGCTCTGTAGCTCATCAATTGTTAGAGTGTCCAAATCATTTGATTCTTCCACTGAACA AACAACATAGTCAAATTTTGAGGTCATAGACCTTAAAATTTTCTCAATGATAACCACCTGATCCATCTTCTTACCATGTATCTTCATCTTATTAGCAATG GTTAGAGTACGAGCAAAGTACTCTTCTACTCCTTTTCCTTCCTTCATATGCAGAATCTCAAACTCTCTTCTCAATGCTTGCAATTGTGTCTGCTTCACCC TTGTTGATCCATGATACTTTTGCTTCATGGAGTCCCAAATCTGCTTTGATGTATCCTTGACAAGGATAGTTTCCAAAATTGTTCTGTCTATGGCCTGAAA CAAGTAGGTATTCCATTCACAACTAAAGTCCAATATTCTTTGGATCGAAGGAAGTTCTCCATAAGCATAGACCAATGATCATAATGGCCGCAAACTTAGG AATTGCAGGTTGCACAAAGCTGCTTTCTGTAGCCATAACTCTTTCACTCTCTTTTATTATCAGGCCCTTGTGATGGAGCCCTGATACCAGATTTGTTGAA TACTAAGAACAACAAAATTGGAATTGAGGTTCTGCAAACTCTGATTTATTCATTAGAAACTGATGGCTAATGTAGCCTTACATAGAAACATAACAGAAAA TAAAACTTACCACTTCTACCACTCCTATAAACGTGGTACACTAACTGAAGCAAATAAAACAAACTGCAATATCCTAATAAATAGGATTTACAAACTAAAA CAAATAAAACAGACCCTAATAAGCACTAGTTTACTTTGACTAATTCAACAATTTCCTCCCTTAAACTGATTTGCAGACTGCAAACAGTTTACTTCTGGTA TTGTACAAACACCAAGCTGTTCTCTGAACTTCAAGAATATATCAAGCTTCAAAGGTTTGGTCATAATATCTGCAACTTGATTTTCTGAAAAACAGTGAAT AAGCTCAACCCCACCATCTCTAGTAAGATCTCGAAGGAAATGAAACCTTACATCAATATGTTTGCTCTTCCATGCAGCACAGGATTCTTTGACAGCTTAA TGGTTGAGCTATTGTCACAAAACATTTTGGTACTCTTTTCTTGAACATGACCAAGCCTCTCTAATACTCTTCTCACCCAAATTCCTTGGCAAGCACATGA GGCAGCAACTACAAATTCTGCCTCAGTAGTGGATAGAGTTACAATTGGTTGTTTCTTTGAAGACCATGCTACAGCTCCACTTTCCAGCAAGAACACATAT CCAGAAGTATTTTTTCGATCATCTAAATCACCCGCATAGTCATTATCAGTGTAACCAAGCAAATTCTCATCTCCACCCCTCTTATACAGAATTCCTAAAT TCACCGTGCCTTTCACATACCTGAGAACTCTTTTTGCAGCTTGCCAATGTAATTCAGTGGGACTTCCCATAAATCTGCTGATCAAACTAACAACAAACAT CAGATCAAGCCTTGTCACAGTTAAGTACATAAGACTACCAACCATTTGCTTGAAGGCAGTATCATCAACCTTAACTCCCATCTCATCTTTCATCAATTTA GAACCTGGTACAATAGGATTATTGACTGAATTGCTCTTTCCCATTCCAAATTTGTCTAGCACATCCTGAGCATATTTCTTTTGGCGGATATAGATCCCTT CTTCACTTTGTAAGACTTCAACTCCTAGAAAATACTTCATTCTACCAAGATCACTCATTTCAAATTCCAGCATCATAGATTTTTTAAAATTATCAAACAT CTCCAAATCATTGCCAGTAAATATAAGGTCATCAACATATAAACTAACAACAAGAATTTGTCCTCCAATTTCATACTTGATAAAGAGTGTATGC
• Tissue: pods
• Gene name: LI_gene_192567;
• Additional information: -

Expression of Ll_transcript_348569

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0.1
• PS2: 0
• PS3: 0.1
• PW1: 0.2
• PW2: 0.1
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_348569

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 39.43% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 43.79% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020225348.1)
• Pfam: GAG-pre-integrase domain (PF13976.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;