| Id Trinity | TRINITY_DN52595_c2_g1_i14 |
|---|---|
| Name Transcript | Ll_transcript_507093 |
| Sequence | AAATTAACCAGTTTAATACGGTCACACCGATCAAACCTGTTATTATTATTATTAAGTAATTTGTGAATGTTAGGAATTAAAATTTCCTAATACTGCAAAA CTCGATTAGTATTATTCTCCGCCCCCTTCATATTGCAGCGGCGCAGTTACATAACGGACGTTTTCTCTTGACGTGAGAAGCCGTTACTGGTTTTTGTTAC CTTTGCGGACTTCACTCTCTTAGGTACGAATTCAGAACAAGAGTCACATTATCTGAGAATAACACATAACAGAGAAGTTGGAAGAAGAATATTGATGCTG ATTTGAGGAGTGGAATTGGGATAAGATAATCATTTGAAGATTCTGTTGGAAACCTAGGGTTTCACAGAGAGAAAATATGGATGGAGAACATGTTAGGATT GGGGCGAAGAAGAAGAAGAGATCGAAGCCGGTGGAAATTGGTTTTGATTCGGATGATAATGAGACCATTGGCTCTATGTTTAAGCTAAGGAGGCCTAAGA AGAAGGTTAATTTGGCATTGGAGGGGTCTTGTGGCGATGGAGGCAAGAATGGTAAGGCTGTTGTTAGGAAAGATTCAGTTGCTGATAACAAGGATTTGGG GGGTATGGATGATACCTTGGCTAGTTTCAGGAAGAGGTTGAAGGGTCCAAAGAGAGATCGCGGATCTGAAGCCAGTGGACGAAGAAGTTCTGCTTCAAAC GTGGGTCTGGTGTCATATTCTGATGGATCTTTGAATGTTTCTGTTGAGGGAATTGCGGATCATGGTCTGTCTGGTGATGATTTCATTGCTCAGGAATCAA GGGGCACCTCAAAGGATGAGAAAGTCGTAGATTTGTTGCTTGACGATGGTACACAGCACCCTTCTGATGAGAAAATGGAAGACTCCTTGTCAGTGATTAT CCGAAAGGCGCAATCTAATCTGATTAAGAAATCGCGGGCCTCTTCAAGTTCAAAGAAGAAAAGGGGGAGTCAGAATGATAATGATTTGAGACCTGGCTCT GAAAGTGTTCCTGAAACTGTAGATTCTATGGGTGAATGTAAATCTAGATCTGCTCCTGCCTCGGAATCAGGTAAAAGAGATCTAACATTTGCTGGTGCTG TGTCTCAACCATCTGCTCCGGGTGAATTTTCTTCCATTTCTGATAAACAAAAGTACAGTGATGATTGTTTTCAAGAGGATGCTGCTGAGGGTATTTGTGA TATTCCAGATGAATCATTAGCTGGTCACTCTCCCTCAACTAATGTCTGCAAAGGAGATAGGCAACAATTGTCTTGTGTGCAATCTGAAAATGTTTGTTTA AATCCGTGTTCTTCCAGGTTAGTTGATGTTGAAATGATTCGTACTATGCCTCTATCAAGAACAGGGGAAGGGACACATGAATGTACTGAGAGTGAGTTCA AGAATAGATCGACTGATGAACTAGCACAAGTGTGTAATGATTCTTCAAAACACGGTGTTTCTGCTTCTATGGAGAAAGAAAGTTCCTTACCTTCTCATGA CACTGGATCCTTGATTAAATCAAGTGGAAGTATATTGATTGAGAATAATTTAACGGTTTCTGGAAACTTTTTCCAGGAATCCTCAGACAATGAAGCTCTA AAGCTCTCTGGATTCCATGTGGAGGAAGATGGAGGTGTAAAATCTGAAACCGAGTTTATATCTGGTAGAAGCTTCTTTGATTGTAGTAGCTCAGATACAA AGGCTGAAGTGAAAGATTTTGCTTTAGGTTCTTCACTTGAAAAAAATGATGTAATAGCTGGTGGTAGCTTATCTCCTATGATGTCTAATGAAGCCAGTGA ATCTGAATTGGCTAATGAGTCAAATCACCCAGACAAACCTTCAGAAATGTGTAATATTCCAAAAGACTCTACTCCTTCAGTTTTTGAATGCTTAGATCCA GTTCAATCCGATGGATCCTCTCTTCCATCTGCAATTCCAGATGAAAATGAGAATTATGCGGAATTTCATGCCTCTCTGTCTGATTTTGCCAACAATGATG GTAAGATCTCAGTCCTTTCACGTGCCGTGCGAAAGGCCAAAATGCATAAGCATGGAGACATGACTTATGAGGGGGATACTGATTGGGAGATTTTAATAAA TGATCAATCTCTTCATGAAAGCCAAGTTTTTGCAGATGGTGACCACACTCTTAGAACAAGGGCGAAGCTTGATTCCTCTTTTAATGTTGTCTATGACTCT GAAAGTGTTGCAGTAGCAGCAGTATCAGCTGGATTGAAAGCCCATGCAGCTAGTCCAATTGAGAAAATAAAATTTAAGGAGATCTTGAAGCGTAAAGGTG GTCTCAGGGAATACTTGGATTGCAGAAATAAGATCTTAAGTCTTTGGAGCAGAGATGTTACACGGATTTTGCCTCTTGCTGAATGTGGTGTTAGTGGTAT CCATTCTGGCGATGAAAGTCCCCGTTCGTTTCTCACTAGGGAAGTCTATGCATTTCTGGATCAATGTGGTTACATAAATGTTGGGATTGCCTCTCAGAAG GAGATTCTTGGAAATAGTGCAAGTGAATGCTGTAAACTTGTAGAAGAAAAAGGTCTTGAGGAAAGTTCCACAGCTTTGGTGGCTGACTCTGAAGATGGAG TTTCCTTTATTGTTGGCCAGACTGAAATGTCAGATACTTCCATGGAGATTAACAAAAGTCTAACACCAGTGTATTACGAAGACCTGAAAACTGAAGCTGC AGAAGACAGAAGGCATGTTAATGCAGCAACAATGGCTATATCAAATATGAGACAACATGAAGAAAGAAAAAATTATGAATGCCTGGAAAACGGGCAAAGC AATGAATCCACCTGCATTAAATCTGCCGTAGGTGATCAGATAGGTGATCCTCTGCAGTTTGATTCAAAGGCTAGAAAGAGAGTGATTATCATTGGAGCTG GTCCTGCTGGGCTAACTGCTGCTCGTCATTTGAAACGTCAGGGATTTCCCGTAATTGTACTTGAGGCTAGGAGTAGGATAGGGGGTCGTGTATTTACAGA CCACTCATCTCTTTCTGTCCCAGTGGATCTTGGTGCTAGCATTATCACTGGTGTGGAGGCTGATGTGGCCACTGAGAGAAGACCAGATCCTTCCTCATTG GTTTGTGCTCAATTGGGCCTTGAGTTGACAGTGCTAAACAGTGACTGTCCTCTTTATGATACAGTTACAGGACAAAAGGTTCCGGCAGATATGGATGAAG CACTTGAAGCTGAATACAATAGTCTTCTTGATGACATGGAATTGCTCGTTGCTCAGAAAGGTGAACAGGCGATGAGAATGTCTCTTGAAGATGGTTTAGA ATATGCCCTTAAGATTCGCCGTATGGCACGCTCTGGAAGTATTGGAGAAACTGAAAAACATAATTCTGATTATAGACCATTTGATTCCAAAAGAGGCTGT CCTGTGAAAAAAAATATTGATGAGGAGATTTTGAGTCCTCTGGAGAGGAGGGTTATGGATTGGCACTTTGCTCATTTGGAGTATGGTTGTGCTGCTTTGC TTACAGAAGTTTCTCTTCCCTACTGGAATCAAGATGATATCTATGGAGGATTTGGAGGAGCTCATTGTATGATTAAAGGGGGCTACAGCACTGTTGTTGA GTCTCTAGGAGAAGGGCTTGCTGTCCACTTGAACCATGTCGTAACAAATGTGTCCTATGGCATCAATGAATCTGACCAGAATAATAAAGTCAAAGTTTCT ACGTCAAATGGGAATGAATTCTTTGGAGATGCTGTCCTCATCACTGTTCCACTAGGCTGTTTGAAGGCTGAAACTATACAATTCTCCCCCCCTTTGCCCT CATGGAAATATTCTTCTGTTCAGCGTCTTGGATTTGGTGTTCTCAATAAAGTCATTTTGGAATTTCCTTGTGTGTTTTGGGATGATGCTGTGGATTACTT TGGAGCAACATCTGAGGAAAGAGGCAAAAGAGGTCACTGCTTTATGTTCTGGAATGTTAGGAAAACAGTCGGGGCTCCTGTCCTTATAGCATTAGTGGTT GGTAAGGCAGCCATTGATGGTCAGAGTTTGAGCTCTTCTGATCATGTCAACCATGCATTGAAAGTTCTCCGTAAACTATTTGGGGAGGCTTCAGTACCTG ATCCTGTTGGACATGTTGTGACTGATTGGGGTAGGGATCCTTTTAGCTATGGTGCTTATTCTTATGTTGCTATTGGAGCATCAGGAGAAGACTATGATAT ATTAGGGAGGCCAGTTGATAACTGCATGTTTTTTGCTGGTGAAGCGACCTGCAAAGAGCACCCTGATACAGTTGGTGGTGCAATGATGAGTGGACTGCGG GAGGCTGTTCGCATAATTGACATATTGAGCACTGGAAATGATTACACTGCAGAGGTGGAAGCAATGGAAGTTGCTTCTAGACAGTTAGATACTGAAAATG AAGTTAGGGATATAACAAAGAGACTAAACGCAATAGAGCTTTCTAACTTATTCTACAAGAACTCTTTGGATGGTGCTCAAATCTTAACCCGGGAAGCTTT ACTAAGGGAGATGTTCCTTAACGCGAAAACCAATGCTGGGCGCTTGCATGTGGCCAAAGAATTGCTATGCCTTCCTGTTGGAAACTTGAAGTCCTTTGCT GGGAGTAAAGAGGGGCTAGCTGTTCTGAATTCATGGATACTGGATTCAATGGGGAAGGACGGTACCCAACTCTTGCGGCACTGTGTGCGTCTTCTTGTGC GTGTTTCAACTGATCTACTTGCTGTACGCTTGTCAGGGATAGGGAAAACAGTGAAGGAAAAAGTTTGTGTGCATGCTAGCCGTGATATTCGAGCTATAGC AAGCCAGTTGGTTAATGTATGGCTTGAAGTTTTCCGCAAGGAAAAAAAAGCTTTTAATGGGGGATTGAAGTTGTCAAGACAAGCAATTGCCTTAGATCTA TCAAAGAGAAAACATTTAAAAGATTCAGCCTCAGGAAAACCTCCTCTGAGTACACATCCTGGTAGCCTTGATAATAGAGGAAAACAACAAGCAGCAATTG ACTCAAGGCATGAGGTCAGCTCTTCCAGGTCCCAAGGTTCAATTAGCAAAGTACTCATCGAGAAGGAGGATAACTGCTATGTTATTTCTGAAGAAGAACG GGCTGCTATCGCTGCTGCAGAAGCTGCCCGTGCTCAAGCACATGCTGCTGCCGAGGCATATGCTGCTGCAGAAGCCAGGCGCAATAAGTTGTTACAGCTT CCAAAGATACCCTCATTCCAAAAATTCGCTTCAAAAAATGATGAGTGTGATAATAGAAAAAAGTGGTCTGGTGCTTTGGGAAGGCAAGATTGTATTTCAG AGATTGATTCGAGGAATTGCAGAGTTCGGGATTGGTCTGTTGATTTTTCTGCTGCTTGTGTTAACCTTGATAATTCGAGAATGCCAGTTGATAACCTTTC ACAGAGAAGTCACTCAAATGAGATTGCCAGCCATTTCAATTTCAGAGAGAACTCAGGAGAAAGTGTTGCTGTGGACAGCAGTATATATACAAAAGCTTGG ATTGACACAGCTGGTGGTGTGGGAATAAAAGATTCTGATGCCATAGACAGATGGCAATCTCAAGCAGCTGCAGCCGATTCTTATTTTTCTAATCCAAGCA TAAGTTTGAAGGATGAGGAGGATTCAAATGGGTGTTCAAGGTTACCCAGCTGGAAGCATGATGGTATGGCAAATGAGAGCTCAATTTCACAGGTTACTGT AAATAAGGAAGCCTTGAAAAGTCATCACTCCCGTGGAGCAGATCATATTAAACAGGCTGTAGTGGATTATGTTGGATCACTACTTATGCCCCTTTATAAA GCAAGGAAACTAGACAAGGATGGCTACAAGGCTATAATGAAGAAAAGTGCAACAAAGGTCATTGAGAAAGCCACAGATAAAGAAAAGGCCATGACTGTTG ATGAGTTTCTAGATTTTAAGCGAAAGACTAAGATTCGCTCCTTTGTGGACACATTGATTGAGAGACACATGGCAATAAAACCAGATATGAAATCCTAATG TTACTGGTTGGGAATAACCTGTACTTTTTGGACTTCTGTGTAATAGTTGCTTAAATCTGGTACTTCAGTTCTCACAGTTTTTGTGGCCATTGACATTTTT GCTGATGAGCACCTCAATCTACCAATGTAAATTATTCAGAAGGTGCCATTAAAGAAACAGATAAAACCTGATCAATCCAAATTGAATGGGCTCTATGTTA ATTCTTCCTCCAGGCAACCTTGAACAGAATACTAAAACATTAATGGTGGATTACCAGTGAACAGGCCTTACTACTTTTATAAACAGATCCAATGCAAATG TCAGTTGGATCTTCCGTGGTACTGGCATCAGCAGGCTGAGGAAGATTATGTCATTCACAGATGGGAGGTAATAGACTATCTTCCTGCCACAGTATGC BLAST |
| Tissue | pods |
| Gene name | LI_gene_194005; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_507093
| Blastp | Lysine-specific histone demethylase 1 homolog 3 from Arabidopsis with 57.96% of identity |
|---|---|
| Blastx | Lysine-specific histone demethylase 1 homolog 3 from Arabidopsis with 57.88% of identity |
| Eggnog | amine oxidase(ENOG410XSNC) |
| Kegg | Link to kegg annotations (AT4G16310) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019436862.1) |
| Pfam | SWIRM domain (PF04433.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |