Ll_transcript_480894

• Id Trinity: TRINITY_DN52700_c1_g1_i18
• Name Transcript: Ll_transcript_480894
• Sequence: CACACTTATTACTCTTCTTTCATTTGTTTACCATATAGGCATAGAATATTAAAAGCACATGTATAGTCTAAGTTCAATTACTATATTATTATATTTTGTA CTATACCTTCTCCATCATCACTAACATTAACACCTTTTCCGTTCACCGAATCTCTTTCCCATTTCGCGTGCCGCACTTTCCGTCATTCACTCGCCGCCGA TCTGATTTTCTTCCTCTGTCACCACCCAATCCTCTTACACCCCATTACGGTGTTTTCATCATCACTATGTTAGTGAATTTTGATCTTTTTTACCCTTTTC TAAATTTTTAACTTTCCTTTTTTGTTGTTCAATTTTATATATAGGAAAAAGGAGCTTCTTTTAACGAGTAATTGTGTCTAATTGCAAGGGTGATTGGTGG TTGGTTACTTTGTAGTATTTGGCTGTGGGTTGCTCTTAATTGGAACCATGTGCTCTTTCTGAACTCTTTGGGAGCAATTCAAGCTATTTAACTGTGATTT GTTCTGTTAATTTCTATAATTTTAGTATTAGTACTAGTTATTTGTGTAGTTAGGAGTGTTTGGATTCAGGTTTTCGAGTTTTAGGTTGTTAATTTGTTAT CATGGAAGCTAGGTTTGGTACAGAAGCTTATCATTATTATGATATGGGTGGTGGTTCCCATGATTTGAGGGGCTTGGGGAAGAGATCCACAGAGTGGGAT TTGAATGAGTGGAGATGGGATGGTGATATGTTCTTAGCTAGCCGGTTGAATCCGGCGGTGGCTGCTGGTGTGGGGCAGCAGTTTTTCCCTCTTGGGTCAG GGATCCCTGTTGCTGCGGTCAGGAGCTCCGGTTCCCCAAATGGTAATTCTTCCTGTTCCGAGGAAGCAGATATTGAGAACAAAAAAGGGAACAAGGAAGG GGAGAGGAAAAGGAGGGTAATTGTGTTGGAGGATGATGGATTGAATGAGGAAGCAGGTGCCCTTAGCTTAAAGCTTGGTGGTCATGGAGAACATTTGGCA GGTAGGGAGGTTGCGAGCTGGGATGGTGTTAATGGCAAGAAAAATAGAGTGGGTGGAGGTACTTCGAATCGAGCTGTTTGTCAGGTGGAGGATTGCAGTG CCGATCTGACCAAAGCTAAAGATTATCACCGGCGTCATAAAGTGTGTGAACTTCACTCCAAGGCTACTAACGCACTTGTGGGAAATGCAATGCAGAGATT CTGTCAACAATGTAGTAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGCCGAAGACGACTGGCTGGCCATAATAAACGCAGAAGGAAA ACAAATCAGGAAGCTGTTCCGAATGGAAGTACACTCAATGAGGATCAGACTAGCAGTTATCTGTTGATAAGTTTATTGAAAATACTTTCAAATATGCAAA CTGAGAGGTCAGATCAAACTACAGAGCAGGATGTGCTAACTCATCTTCTAAGGAGTCTTGCTAGTCAGAATAGTGAACAAGGGGGCAAGAACTTGTCTAA CCTTTTGCGGGAACCAGAGAACTTGTTGAAAGAGGGGAGTTCATCTGGGAAGTCAGAGATGGTTTCAACTTTATTCTACAATGGTTCTCAAGGCTCTCCA ACTGATATAAGACAGCACCAAACAGTATCTATGAGTAAAATGCAAAAGCAAATGATGCTTATACATGATGCTAGGGTTACTGATCATCAAACGATGTCTT CTACAAAGCCCAGCATTACGAACAGCCCTCCAGCTTACTCAGAAGCCAGGGACAGTTCTGCTGGACAGGTCAAGATGAATAATTTTGATTTGAATGATAT ATATATTGACTCAGATGATGGAATTGAAGATGTAGAAAGATTGCCCATCTCCACAAATCATGGGACTAGCTCTCTTGACTACCCATGGGCACAACAAGAT TCTCATCAGTCAAGTCCACCTCAAACAAGTAGAAACTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGTGGAGAAGCGCAGGTATATATGTTTT GCTGTATTATTTTGAATTGGCTATTTTACTTGTGCTTTCCTCTACGGTCCTTGGACTAAGATACAGCTGAAAACTCAAAAGCCACAAGTATTGGATTAAA TTTGTTACATATTGATTTTGTCATATTTAACTATTAATTTTTCGTTCCCACCATCAGAGCCGCACAGATAGAATTGTTTTCAAACTCTTTGGTAAAGAGC CAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTCGACTGGCTATCCCACAGTCCTACTGATATAGAGAGCTATATACGGCCTGGTTGTATTGTTTT GACCATTTATCTCCGTCAAGATGAGGCTGTGTGGGATGAACTTTGCTACAATCTGAGTTCCAATTTGAATAGGCTGCTGAATGTCTCTGAGGATTCTTTT TGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAAATAGCCTTCATTTTCAATGGTCAAGTTGTCATAGATAAATCCCTACCTTTCAAAGGTAGCA ATTATAGCAAGATTATGAGTGTCAGTCCAGTTGCTGTACCAGCATCAAAGCGAGCTCAGTTTTCTGTTAAGGGTGTCAACCTGATAGGCTCTGCCACTAG GTTAATATGTGCTTTAGAAGGGAAATATCTTCTATGTGAAGATGCTCATGAGTCAATCGATCAACACCCCAAGGAGCTTGATGAGATCCAGTGCATCCAG TTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGCTTGAGTAGCAGCTTTTTTCCTTTTATAGTGGTTGAAGAGG ATGTTTGCTCAGAAATCTGTTTGCTTGAGCCTCTATTAGAATTTAGTGAAACTGATCCAGATACTGTTGGGACTGGAAAAATTGAAGCAAAAAGTCAAGC CATGGATTTCATTCATGAAATTGGTTGGCTTCTTCACAGAAACCAAAGGAAATCTAGGATGGTTCACTTAAACTCTAGTGCAGAACTCTTTCCATTAAAA CGGTTCAAGTGGCTCATGGAGTTCTCTATGGATCATGATTGGTGTGCAGTGGTGAAAAAGCTATTGAACCTGCTTCTTGGTGGAACTGTGACTTCAGGAG ATCACCCTTCCCTGTATCTTGCACTTTCAGAGATGGCCCTCCTTCACAGAGCTGTAAGGAGAAATAGCAAGCAGTTAGTGGAGCTGTTTTTGAGATATGT TCCTGAGAATGTTTCTGATAAAGCAGGAACTGAAGACAAGGCACTAGTTGATGGAAAGAATAAGAGCTTCTTGTTTAGACCTGATGTTGCTGGTCCCGCT GGTTTAACACCTCTCCATATAGCAGCTGGCAAAGATGGTTCAGATGAAGTACTGGATGCTTTAACTAATGATCCTTGCATGGTGGGAATTGACGCGTGGA AGAATGCTCGTGACAGCACAGGCTCCACGCCTGAGGATTATGCACGCTTACGTGGCCATTATACTTACATTCATTTAGTGCAGAAGAAAATTAATAAGAG ACAAGGAGCACCTCATGTGGTGGTTGAGATTCCCAGCAATGTGACAGAGAGCACTTCAAACCAGAAGCAAAATGAGTCATCCACTACCTTTGAGATCGGA AAGGCTGAAGTAAAACGCGGCCAAGGTATCTGCAAAGCTTGTGATACTAAATTGTCGTGTAGAACTGCAGTAGGCAGGTCTTTGGTTTACAGACCTGCAA TGCTCTCAATGGTGGCCATAGCAGCCGTCTGTGTCTGCGTGGCCCTTCTATTTAAGAGCTCGCCGGTAGTTTTATATGTATTCCAACCCTTCAGGTGGGA GTCATTGGAATTCGGTACATGCTAAGGTTCATTAACTTGAAACTTAAATAAGACTTGATAGGTAATAATATAAGGATGCATTTGTATACTTAATGACTGA GATTTCCTGTAGGATTAGTTCTTTGTATTGGCTAAATTGTGTAATATTATTTACATATTTATTATCCTTCAATGGACTTCCTTGTATTATGTATTGGATA TTGACTCTTCTGAAACTGTATTTTTGTAGAATCCTATATATTTCAGTGTAATAATTGTATGGGAATATTAAATATTGTCTTTATATTTCAATCTGCATTG TACATGTTTCATTAGTATACGCCTGATGGATTCTGGATTCTGGATTCTCACCCAAAGTATTTTAGTATTATATTGACATGTATTTTTATCACTGATTCTA AGGAATGTAAAGG
• Tissue: pods
• Gene name: LI_gene_194862;
• Additional information: details;

Expression of Ll_transcript_480894

FPKM

• PAB: 0.3
• PNAB: 0
• PS1: 0.1
• PS2: 0.2
• PS3: 0
• PW1: 0
• PW2: 0.2
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_480894

• Blastp: Squamosa promoter-binding-like protein 12 from Arabidopsis with 45.86% of identity
• Blastx: Squamosa promoter-binding-like protein 1 from Arabidopsis with 58.11% of identity
• Eggnog: Squamosa promoter-binding-like protein(ENOG4110DQF)
• Kegg: Link to kegg annotations (AT3G60030)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019427869.1)
• Pfam: SBP domain (PF03110.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;