Ll_transcript_480877

• Id Trinity: TRINITY_DN52700_c1_g1_i6
• Name Transcript: Ll_transcript_480877
• Sequence: CACACTTATTACTCTTCTTTCATTTGTTTACCATATAGGCATAGAATATTAAAAGCACATGTATAGTCTAAGTTCAATTACTATATTATTATATTTTGTA CTATACCTTCTCCATCATCACTAACATTAACACCTTTTCCGTTCACCGAATCTCTTTCCCATTTCGCGTGCCGCACTTTCCGTCATTCACTCGCCGCCGA TCTGATTTTCTTCCTCTGTCACCACCCAATCCTCTTACACCCCATTACGGAAAAAGGAGCTTCTTTTAACGAGTAATTGTGTCTAATTGCAAGGGTGATT GGTGGTTGGTTACTTTGTAGTATTTGGCTGTGGGTTGCTCTTAATTGGAACCATGTGCTCTTTCTGAACTCTTTGGGAGCAATTCAAGCTATTTAACTGT GATTTGTTCTGTTAATTTCTATAATTTTAGTATTAGTACTAGTTATTTGTGTAGTTAGGAGTGTTTGGATTCAGGTTTTCGAGTTTTAGGTTGTTAATTT GTTATCATGGAAGCTAGGTTTGGTACAGAAGCTTATCATTATTATGATATGGGTGGTGGTTCCCATGATTTGAGGGGCTTGGGGAAGAGATCCACAGAGT GGGATTTGAATGAGTGGAGATGGGATGGTGATATGTTCTTAGCTAGCCGGTTGAATCCGGCGGTGGCTGCTGGTGTGGGGCAGCAGTTTTTCCCTCTTGG GTCAGGGATCCCTGTTGCTGCGGTCAGGAGCTCCGGTTCCCCAAATGGTAATTCTTCCTGTTCCGAGGAAGCAGATATTGAGAACAAAAAAGGGAACAAG GAAGGGGAGAGGAAAAGGAGGGTAATTGTGTTGGAGGATGATGGATTGAATGAGGAAGCAGGTGCCCTTAGCTTAAAGCTTGGTGGTCATGGAGAACATT TGGCAGGTAGGGAGGTTGCGAGCTGGGATGGTGTTAATGGCAAGAAAAATAGAGTGGGTGGAGGTACTTCGAATCGAGCTGTTTGTCAGGTGGAGGATTG CAGTGCCGATCTGACCAAAGCTAAAGATTATCACCGGCGTCATAAAGTGTGTGAACTTCACTCCAAGGCTACTAACGCACTTGTGGGAAATGCAATGCAG AGATTCTGTCAACAATGTAGTAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGCCGAAGACGACTGGCTGGCCATAATAAACGCAGAA GGAAAACAAATCAGGAAGCTGTTCCGAATGGAAGTACACTCAATGAGGATCAGACTAGCAGTTATCTGTTGATAAGTTTATTGAAAATACTTTCAAATAT GCAAACTGAGAGGTCAGATCAAACTACAGAGCAGGATGTGCTAACTCATCTTCTAAGGAGTCTTGCTAGTCAGAATAGTGAACAAGGGGGCAAGAACTTG TCTAACCTTTTGCGGGAACCAGAGAACTTGTTGAAAGAGGGGAGTTCATCTGGGAAGTCAGAGATGGTTTCAACTTTATTCTACAATGGTTCTCAAGGCT CTCCAACTGATATAAGACAGCACCAAACAGTATCTATGAGTAAAATGCAAAAGCAAATGATGCTTATACATGATGCTAGGGTTACTGATCATCAAACGAT GTCTTCTACAAAGCCCAGCATTACGAACAGCCCTCCAGCTTACTCAGAAGCCAGGGACAGTTCTGCTGGACAGGTCAAGATGAATAATTTTGATTTGAAT GATATATATATTGACTCAGATGATGGAATTGAAGATGTAGAAAGATTGCCCATCTCCACAAATCATGGGACTAGCTCTCTTGACTACCCATGGGCACAAC AAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTAGAAACTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGTGGAGAAGCGCAGAGCCGCAC AGATAGAATTGTTTTCAAACTCTTTGGTAAAGAGCCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTCGACTGGCTATCCCACAGTCCTACTGAT ATAGAGAGCTATATACGGCCTGGTTGTATTGTTTTGACCATTTATCTCCGTCAAGATGAGGCTGTGTGGGATGAACTTTGCTACAATCTGAGTTCCAATT TGAATAGGCTGCTGAATGTCTCTGAGGATTCTTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAAATAGCCTTCATTTTCAATGGTCAAGT TGTCATAGATAAATCCCTACCTTTCAAAGGTAGCAATTATAGCAAGATTATGAGTGTCAGTCCAGTTGCTGTACCAGCATCAAAGCGAGCTCAGTTTTCT GTTAAGGGTGTCAACCTGATAGGCTCTGCCACTAGGTTAATATGTGCTTTAGAAGGGAAATATCTTCTATGTGAAGATGCTCATGAGTCAATCGATCAAC ACCCCAAGGAGCTTGATGAGATCCAGTGCATCCAGTTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGCTTGAG TAGCAGCTTTTTTCCTTTTATAGTGGTTGAAGAGGATGTTTGCTCAGAAATCTGTTTGCTTGAGCCTCTATTAGAATTTAGTGAAACTGATCCAGATACT GTTGGGACTGGAAAAATTGAAGCAAAAAGTCAAGCCATGGATTTCATTCATGAAATTGGTTGGCTTCTTCACAGAAACCAAAGGAAATCTAGGATGGTTC ACTTAAACTCTAGTGCAGAACTCTTTCCATTAAAACGGTTCAAGTGGCTCATGGAGTTCTCTATGGATCATGATTGGTGTGCAGTGGTGAAAAAGCTATT GAACCTGCTTCTTGGTGGAACTGTGACTTCAGGAGATCACCCTTCCCTGTATCTTGCACTTTCAGAGATGGCCCTCCTTCACAGAGCTGTAAGGAGAAAT AGCAAGCAGTTAGTGGAGCTGTTTTTGAGATATGTTCCTGAGAATGTTTCTGATAAAGCAGGAACTGAAGACAAGGCACTAGTTGATGGAAAGAATAAGA GCTTCTTGTTTAGACCTGATGTTGCTGGTCCCGCTGGTTTAACACCTCTCCATATAGCAGCTGGCAAAGATGGTTCAGATGAAGTACTGGATGCTTTAAC TAATGATCCTTGCATGGTAAAATCTCTGCTATTTTAAATAACATCACTGAGAATAGTCCCTTTAGTATGTTGAGATTTTCGTATAGTTTTTTATCACTAC ATCATCACTATTATGCTGTCCACTTCACTGTTTGGTATAGTACCTGGGTATTGTGAGAATGGCCTGAATTATAGTACCTGGGTAGATGGCAAGAAAAAGT GTTGCTTCAAAGTTATTTTCTTATGTTGTCTGTCTGGTTGGAAATCTGGAGCATCATGTGTACAGTTTAGTCTTGCATTTGTTATTTTTGTGATGAGATG TTTTTTTATGCAGGTGGGAATTGACGCGTGGAAGAATGCTCGTGACAGCACAGGCTCCAC
• Tissue: pods
• Gene name: LI_gene_194862;
• Additional information: details;

Expression of Ll_transcript_480877

FPKM

• PAB: 0.4
• PNAB: 0
• PS1: 0.5
• PS2: 0.3
• PS3: 0.3
• PW1: 0.5
• PW2: 0.1
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_480877

• Blastp: Squamosa promoter-binding-like protein 1 from Arabidopsis with 51.76% of identity
• Blastx: Squamosa promoter-binding-like protein 1 from Arabidopsis with 51.54% of identity
• Eggnog: Squamosa promoter-binding-like protein(ENOG4110DQF)
• Kegg: Link to kegg annotations (AT2G47070)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441265.1)
• Pfam: SBP domain (PF03110.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;