Ll_transcript_479146

• Id Trinity: TRINITY_DN52704_c1_g1_i18
• Name Transcript: Ll_transcript_479146
• Sequence: CTAAAATCCAAAAATATGAAAATAATTAATGAGTAGTTTAATGAAGAAGGTTAATAATTAGAGATAATTAAAATATGTGAATATAATAGAAAACAGAGGA GTGATAGTGAGGAGTTGCATGTTCTGTCTGAATTATAAGTTGGAGAAAGTGTTGAAGATTGAAGCCCCATTATTGATAGCCATGGCTTTCTCATAACTTC ACACTCAGGGATCTGAAAAAAACTCATTCTTTTACATGAAAAAAGAGGATATTTGATAATCAATTTTGGTTCTCAAATATGTCGTCAAAACCATTCAGGG CTAGTCGATCATCTTTATCAACAATGTCAGATGCATCTGAAGGCCAAAAGCCTCCTTTACCTTCGAATGTAACATTTGCCCGAAGAACTTCCTCGGGTCA CTATGTCAATTACTCTAGGGATGATCTTGATAGCGAGCTAGGGAGTAATGACTACATGAATTACACAGTGCATTTACCACCCACCCCTGATAACCAACCT ATGGATCTATCTATCTCTCAGAAAGTTGAGGAGCAATATGTGTCAAATTCACTCTTCACAGGTGGATTCAACAGTGTTACTCGAGCACATTTGATGGATA AGGTTATAGAATCTGAAGCAAACCATCCACAGATGGCTGGTGCAAAAGGATCTTCGTGTGCAATTCCTGGATGTGATTCTAAGGTGATGAGTGATGAACG TGGCGAGGATATTCTTCCTTGCGAGTGTGATTTTAAGATATGTAGAGATTGTTATATGGATGCAGTAAAAACGGGAGGTGGGATATGCCCGGGATGCAAG GATCCATATAAGAACACAGAACTAGATGAAGTTACTGTGGATGATGTGCATCCCCTTTCACTTCCTCCGTCAAGTGGAATGTCTAAAATGGAGAGGAGAT TGTCTCGGATGAAGTCAAATAGTAAATCGGCATTAGTGAGGAGCCAAACCGGAGACTTTGATCATAATAGGTGGCTTTTTGAAACAAAGGGTACCTACGG CTATGGCAATGCTCTATGGCCAAAGGAAGGAGGTTTTGGAAACGGAAAAGGGGAAGAAAATGCTGAGCCAACTGAGTTTATGAGCAGGCCCTGGAGGCCC CTTACGCGGAAGCTGAAGATACCTGCAGCTATTCTGAGCCCATATCGGCTTATTATTTTTATTCGGTTGATTGTACTTGGACTTTTCCTGGCATGGAGGG TCCAGCACAAAAATAGTGATGCAATCTGGCTGTGGGGCATGTCTGTGGTTTGTGAGATCTGGTTTGCTTTTTCCTGGATTTTGGATCAACTTCCCAAACT ATGCCCAGTGAACCGTTCCACCGATCTTAATATTCTGAAGGAGAAATTTGAAACACCAACTCTTAGCAATCCTACTGGAAAGTCTGATCTTCCAGGCATA GATATCTTTGTCTCCACGGCTGATCCTGAGAAAGAGCCACCTCTTGTCACTGCCAACACTATCTTGTCTATTTTAGCTGCTGATTACCCAGTTGAGAAGC TGTCCTGCTATGTTTCTGATGACGGAGGCGCGCTTCTAACTTTTGAGGCAATGGCTGAAGCTGCTAGCTTTGCTAATGAGTGGGTTCCCTTCTGCCGTAA ACATGATATAGAGCCGAGGAATCCTGAATCATATTTCAACTTAAAGAGAGACCCTTATAAAAACAAAGTGAAGCCTGATTTTGTCAAAGATCGTAGACGG TTGAAGCGTGAGTATGACGAGTTCAAGGTCAGGATTAATGGTCTGCCCGATTCTATCCGTCGCCGATCAGATGCCTATCATGCAAGAGAGGAAATCAAGG CCATGAAACTTCAGAGACAAACCAGGGGAGATGAACCTATAGAAACTGTAAAGATTCCCAAAGCAACATGGATGGTTGATGGAACTCATTGGCCAGGGAC TTGGTTAAGTCCTACATCTGAGCACTCTAAGGGTGACCACGCTGGTATAATTCAGGTGATGTTGAAACCTCCCAGCGATGAACCACTTCTCGGGGGTTCT GATGAAGCTAAGCTTATCGACCTGACAGATATTGATATCCGACTTCCCCTTCTTGTTTATGTTTCTCGGGAGAAGCGTCCAGGGTATGATCATAACAAAA AAGCAGGGGCTATGAATGCCTTGGTCCGTGCCTCCGCTATAATGTCTAATGGTCCTTTTATACTCAATCTTGATTGTGATCACTATATCTACAACTCGAA GGCAATGAGGGAAGGCATGTGCTTTATGATGGATCGCGGAGGTGATCGCCTATGTTATGTCCAGTTCCCACAGAGGTTTGAGGGGATCGATCCCTCTGAT AGATATGCTAATCATAACACTGTATTCTTTGATGTGAATATGCGAGCCCTTGATGGACTGCAAGGGCCGTTCTATGTGGGAACCGGTTGCCTTTTTAGAA GGGTTGCACTTTATGGTTTTGACCCTCCTCGCTCTAAAGAGCACCACTCAGGTTTCTGTTCTTGCTGCTCTGGTCGTAAGAAGAAGCATGCATCATTAGC AAGCACCCCGGAAGAGAATAGAGCACTAAGGATGGGTGATGATGAAGAAGAGGAAATGGACCTATCGTCCTTCCCTAAGAAGTTTGGAAACTCAACTATT CTCATTGAGTCAATCCCCGTGGCAGAGTTCCAAGGCCGGCCACTTGCTGATCACCCCGTAGTGAAAAATGGACGCCCACCTGGTGCTCTCACCTTACCCC GTGATCTTCTTGATGCATCAACCGTAGCAGAGGCTATCAGTGTCATCTCTTGTTGGTATGAGGACAAGACTGAGTGGGGGCAACGTGTTGGATGGATCTA TGGATCCGTTACGGAGGATGTGGTCACTGGATATAGGATGCACAATAGGGGGTGGAAATCTGTGTACTGTGTGACAAAGCGTGATGCCTTCCGTGGAACT GCTCCTATCAATCTTACTGATAGGTTACACCAGGTTCTTCGATGGGCTACAGGCTCGGTGGAAATATTCTTCTCTCGAAACAATGCCCTTCTGGCTAGCC CAAGAATGAAACTTCTTCAAAGAATTGCATACCTCAATGTCGGAATCTACCCCTTCACTTCCATCTTTCTTATTGTATACTGCTTCCTTCCTGCACTGTC ACTCTTCTCCGGCCAATTCATAGTTCAAACACTCAATGTCACATTTCTCTCTTATCTCTTAGGCATCACAGTCACTCTGTGCATACTTGCAGTGCTTGAA ATCAAGTGGTCTGGCATTGAGCTAGAAGAATGGTGGAGAAATGAGCAGTTTTGGTTGATCGGAGGGACAAGCGCTCATCTAGCTGCGGTGCTTCAAGGTT TGCTCAAAGTCGTAGCTGGTATCGAAATCTCATTCACCTTGACTTCAAAATCTGGTGGTGATGATGTAGATGACGAGTTTGCCGATCTATATATTGTGAA ATGGACATCACTTATGATACCGCCAATCACAATCATGATGGTTAACTTGATAGCAATAGCCGTTGGAGTTAGCAGAACCATATACAGCGTTATACCGCAG TGGAGCCGTTTGCTCGGTGGAGTTTTCTTCAGTTTTTGGGTATTGACTCATCTCTATCCTTTTGCAAAAGGTTTGATGGGAAGAAGAGGAAGGACACCTA CCATTGTTTTTGTATGGTCAGGCCTCATTGCAATTACAATCTCACTTCTCTGGGTAGCAATCAATCCTCCTGCTGGTACTAACCAAATTGGTGGTTCCTT TCAGTTCCCGTGATCATCATCTCGATACCATCTCGATATATTCGTCAACTTTTACATTATTATTACGAGATTCGTGAACCTTTATGTGATGATATGCATC GTTAACTAGAGAACCTGGCAACTATGACCATCATATCTCATTCCTTTTGCCATGAATATGTCACCAGTTTTTATAATTTGTTTCAAAAAGTTTTACGCCT CTTAATTTAGCAACTTAATGGGCTTAAATTATGTTGTTTATTTTGCTTATGAATTTTGTTTTAGAATTTGAATCTAGAAATGAGATAATTTTTTTACCTC ATTGTAAGAGTAAAAATATTATTATATTTGTATATAAAGGATACAAATCATAAAGCTATTTTTTCTTTTACTTTCTGTATTGTTCTCTCTGGTAGCGGGA GGATCTTCACCTAATGTTTGAACGTTATTC
• Tissue: pods
• Gene name: LI_gene_194891;
• Additional information: details;

Expression of Ll_transcript_479146

FPKM

• PAB: 2.9
• PNAB: 12
• PS1: 12.8
• PS2: 6
• PS3: 7.8
• PW1: 11.9
• PW2: 12.2
• PW3: 5.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_479146

• Blastp: Cellulose synthase-like protein D3 from Arabidopsis with 83.23% of identity
• Blastx: Cellulose synthase-like protein D3 from Arabidopsis with 82.97% of identity
• Eggnog: Glycosyl transferase, family 2(COG1215)
• Kegg: Link to kegg annotations (AT3G03050)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019423665.1)
• Pfam: RING/Ubox like zinc-binding domain (PF14570.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;