Ll_transcript_479859

• Id Trinity: TRINITY_DN52761_c3_g3_i3
• Name Transcript: Ll_transcript_479859
• Sequence: AATAAGGATGATATTATGAATAAAGACTATAGAGATTTGGATGAAACAATGGAATGGGATGCTGATGAAACTTACAACAAGAATTTTTCTCCAGGGTTTG AGGAACGAAAATACAAGAGACAGAGTCAATCCCCAAAAAATCGTCGGAGCATGTCTGGCAGGAGTAGTCGGAGCAGGAGCCCTCCCCATGGTTTTAGGCG GGATTCAGGATTCAATGATAAAAATAGAACGAGAGCTGGAGGATTGACACAACCATGTAGAGAATTTGCTGCCGGTAAATGTAGAAGAGGTAGCCTTTGC CATTTTCTTCACCATGATAATCAAAATTACGAGGACAGTTGGGAAAGTAAGCACAGGGAAGATGGTGCTCCCAGATATTCTGCTTCCCATGATAGTAGAG ACCATTCTCATAGGAGTGGTAGATCTAATGATGGATACAGTAAAGGTTCTGTGGATGAATCAACTAGAGAAAGGGAAAATGATAGAAGACGGAGAGATTA TTCTTTTGATCAGGGTGGCGGGCATGGGCCAAACCGTAGCGGTCTTATTTGCAAATTTTTTGCGAATGGAAACTGCCGCAATGGTAAATCTTGTAGATTT TCTCATGATAAGCAAACATATGAGAGCCCTAATAGAAGATCAAGGGATGATACATGGGGGAGCAATCCGGGTGGAGATCATCAGACATTGGATAGACCAA AATTGTCTGATTCAGTTAGTCCTACTAGAAGACGAAGAGATGATAGATGGGGTTCAGATGGCAATATGGTAGAGAATGACAACCCAAAGCAGAATGCTGC AGTAACTGTGTCTGATACAGCAAAGCTGGTTGAGGACAAATGTGGAAATATAGGAGCCATCGATCCTGGATTCTCTGCTTGGCCTACGAAGGATGGATGG GGTCATGGTTTAGATAATAACAGAGTGCATGGTGAACCAACATTTTCAAGTAATAAGAAGGAAAATGATCACCAGGTGGCAGAAAATGCTGGTTCCAACA TGCATGTTTCCCAGCCAACAGGTACAAGCAATTGGTCTGGTAATGAAATTTCTCTTGATTGGAATTACAGGGTGGGATCTTCTAGTCATATTCAAGAAGA GCATGAACAGAATAAGCATGGCATAGCCCAGGATGGTACATATATAGCCACTGAACATGAAGGAACACAAGTTCCAGGGAAAGGCTTTAATCAGAATGCA CATAATGTAAATCCTTTGCATTCTTCAAGCGGTCATGGAGTCAGACAAAGTCAAGTGACTGTTCCCATTCTTCCTTCAAGAGGAGTTGTTACTGATATTC TTCCAGTGCAAGACTTTAATCAGAATGTGCAGAATATAAATCCTTTTCAACCTTCAAGTGGCCATGCAGTTGGACAAAGTCAAGTGGCTGTTTCTGGTCT TCCTTCAAGAGGAGTTGTGGAAAGTATGCATACCCAACAAGTTTCTACTGATGTTCTTCCAGGGCAAGGATTTAATCAGAATGAACAGAACATAAATCCT TTGCATTCTTCAAGTGGCCATGAAGTTGGACAAAGTCGAGCTGATCTTCCCATTCTTCCTTCAAGAGGAATTGTTGAAAGTATGCATGGCCAAGAAGTCT CTGCTGAGAAGAAGTACACAGTTGAACCAAATTTCACAGATGCAGGCAATTCACAAGTTAGTTCAGGAAACCCTCAAACTCAGAACAAGGTAAGCAATGA ACAGCTTGCTCAGCTGAGCAATCTCTCAGCCTCTCTAGCTCATATCCTTGGATCAGGTCAGCAATTACCACAGCTTTATGCTGCTTTAAATTCTCATGAT GCAAAGGACAGTCCCTCACTAGCCAAAACTGAAGTGCCAGCTATGCCTGTTCCCAACACATTCATTAAGCCAGACCCTGTCATTGGATTCACGAAGCAGT ATGATCCAGTGTGTGACAGTATTGAAACAAAAAATGCTGTTGCAAGTGGGTCTACCCTGGCTTTGTCTCTAAGTAAAAAAAATGCAGAAGCTAAGGAGAA GAATGAAGTGGTAGTTGTGGAAAGGCAAAGTTCTCCAAGTGGTCATAAAAATACAAAAGAGAATGGTCCTTCAGAAAACATGGACCAAAATGGTGGACCT GAAGACGCCAAGAAAACAAAGGATGCAAAGGGGATCCGTGCATTTAAATTTGCATTGGTTGAGTTTGTTAAGGAACTTCTGAAACCAGCATGGAAAGAAG GCCAAATTAACAAAGAAGACTACAAAGCAATTGTGAAGAAAGTCGTTGATAAAGTAACCAGTACCATGCAGGGCGCCAATATTCCCCAGACGCAAGAGAA AATTGACCACTATTTGTCATTCTCAAAATCAAAACTTAGCAAACTTGTACAGGCATATGTGGAGAAGGTTCAGAAAGCTTAGTGCAAGTATAGAAATTTG GCGACCAAATATTTATTTCCATGTTACTGTCGTTAGCTTGTACTTTGTTTCCTTTTCCAGAGTCTCTTTTTTGGTCCCTTTGTTCTTGTACTTTAGTTGC TAGTAGCGTCTAATAGGCATTGCAGCTCGAGTACATACATTCTGGGAGCTCTCATTTCCTTCTTTTTATGGCCTGTAGTTCTTTTTTCTTGTTTCTTTTT GGAAGAAATATTGGCTGCTCATGCTATTAGATATTAATTTGCAAATTGAATATTAGGGAGTTGTTATGTGGGAGTCATTTTATTTTACTAGTTTATTTTG TTTAGAGGAAGTGTTATCTGTTTCTTAAAGCAGAATTCCAAACATGGTGTACTTCATCTTCCTGAAGAGTAGTACTGGACTTGTTAAAGAAGTTAGTGTG GGGTACTTTGCTGCTTTTGAGTGTTGGGAAAAATAGAGATGAAATAACTTTAATGGGTTTCTTAGGGATTATATTGGAGTCTGGTTTTGGTGAGCATTGT GAATTTGTACTCAGTGTTGTGCAAACTTTCAGACCTGTTAGTTCCAGCTTTCTGACTTTGTAGAAAAGTTTTAATGGTGTTATATTTGTACTTTACTTAT CTACTTCCTTTACTTACTGTTATTAGTAAACAATGAAGTGACATAGTGCTTGTATTATGAGTTGCTGAGGTGACAATTGGCAGAAAATGGATCTTTGATT AGATTTGTTTCATTTCATCTAATGACCATTTTGCTTACCATGGTATTCAATAGAGCAATGGTTAAAGAACAAAAAAGGAAACAAACTTTGTATTGGAAAA TTAAAAATATCATCTTTT
• Tissue: pods
• Gene name: LI_gene_195368;
• Additional information: details;

Expression of Ll_transcript_479859

FPKM

• PAB: 2.5
• PNAB: 10.3
• PS1: 13.7
• PS2: 11.5
• PS3: 14.3
• PW1: 11.6
• PW2: 11.2
• PW3: 9.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_479859

• Blastp: Zinc finger CCCH domain-containing protein 38 from Arabidopsis with 37.68% of identity
• Blastx: Zinc finger CCCH domain-containing protein 38 from Arabidopsis with 76.4% of identity
• Eggnog: zinc finger CCCH domain-containing protein(ENOG410ZKTI)
• Kegg: Link to kegg annotations (AT3G18640)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434524.1)
• Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (PF00642.23)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;