Id Trinity | TRINITY_DN52847_c3_g1_i7 |
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Name Transcript | Ll_transcript_493722 |
Sequence | GTAACACTTACATAACGTTATCTCCACCAGTGGCATTTTCGTAATCTCATCTTAAATTGCAGAAAACACCACTCTCTTTCTTCCTCATAGTATTTACATT TTAACACCGTGCTATCTTACAAATACAAAAACAATTCCCCTCTCTCACTGAACTCGATCTCTTTTTGAATTCGGTTTCTGATCTACGTCGATTCATATCG AATTCTCTATCAACGCTACTTCATTCTCCAATCTACTACAATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAAAGATCAGAAAGAGTAAAATCT GTGGATTTGCATCCAACGGAACCATGGATTCTGGCAAGTTTGTACTCAGGGACTGTCTGTATTTGGAACTACCAATCTCAGATAATGGCCAAATCTTTTG AGGTTACAGAGTTACCAGTTAGGTCAGCCAAGTTTATTGCACACAAACAGTGGGTTGTTGCTGGCGCAGATGATTTATTTATTCGTGTATATAATTACAA TACAATGGATAAAGTTAAAGTATTTGAGGCACATACAGATTACATTAGATGCGTGGCAGTTCATCCTACCCTTCCTTACGTGCTGTCATCATCTGATGAT ATGCTCATAAAGCTTTGGGATTGGGAAAAAGGTTGGGTTTGTACCCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGGTATTCAATCCTAAAG ACACCAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAACCTTGGCTCTGCTGACCCCAATTTTACATTGGATGCTCATCAGAAAGG AGTAAATTGTGTGGATTACTTCACAGGTGGTGACAAACCTTATCTAATTACTGGTTCTGATGACCACACTGCCAAGGTATGGGATTATCAGACCAAAAGT TGTGTCCAGACTCTAGAAGGTCACACACACAATGTGTCTGCTGTATGTTTTCATCCCGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTAC GCATATGGCACTCAACAACTTATAGGCTTGAGAATACACTGAACTACAGTCTTGAAAGAGTATGGGCTATTGGATACTTGAAGAGTTCACGTCGGGTTGT GATTGGCTATGACGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCCGTGGCTAGCATGGACAATAGTGGGAAAATTATTTGGGCTAAGCATAAT GAAATTCAGACTGTCAATATAAAGAGTGTAGGAGTAGATGTGGAGATTGCTGATGGAGAAAGATTACCTTTGGCTGTTAAGGAGTTGGGCAATTGTGATC TCTACCCACAAAATTTAAAGCACAACCCCAATGGAAGATTTGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTGCATTGGCATGGAGAAATAG GTCATTTGGTTCGGCACTGGAATTTGTTTGGTCTCCGGATGGAGAATATGCTATCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAG GAAAAGAGGAGTATCCGACCAACATTTTCAGCTGAACGAATATTCGGTGGCACTTTGCTTGCGATGTGCTCAAATGATTTCATCTGTTTTTATGATTGGG CTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAGAACCTCTACTGGGCTGATAGTGGTGATCTTGTAACAATCGCAAGTGATACATCATTCTA CATCCTGAAGTATAATCGTGATGTTGTTGCATCACATTTAGATAGTGGAAGACCCGTAGATGAGGAGGGTGTTGAAGATGCTTTTGAGCTCCTTCATGAA ATGAATGAACGTGTCAGGACAGGCATCTGGGTAGGGGATTGTTTTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAGGTAACTA CAATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCGAACCAAAGTCGGGTTTATTTAATTGACAAAGAGTTCAATGTTATTGGATACAC ACTGCTTTTAAGCTTGATTGAATACAAGACACTTGTGATGCGTGGTGATTTAGAAAGGGCAAATGAAATTCTGCCATCAATTCCTAAAGAGCATCACAAC AGTGTGGCTCGTTTCCTGGAATCGCGAGGGATGATAGAGGAGGCTCTTGAAGTAGCAAC BLAST |
Tissue | pods |
Gene name | LI_gene_196236; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_493722
Blastp | Coatomer subunit beta'-2 from Arabidopsis with 90.77% of identity |
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Blastx | Coatomer subunit beta'-2 from Arabidopsis with 90.77% of identity |
Eggnog | coatomer protein complex, subunit beta 2 (beta prime)(ENOG410XNNY) |
Kegg | Link to kegg annotations (AT1G52360) |
CantataDB | Link to cantataDB annotations (CNT0002993) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019436408.1) |
Pfam | WD domain, G-beta repeat (PF00400.31) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |