miRNA 1 details

Id Micro1
SequenceAAAACATCTGATAACCTGAAACGG 
Annotated namesosa-miR5825; 
Annotated pre-miRNANone

Targets of miRNA 1

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_28803; FTRINITY_DN52201_c0_g1_i2 944 967 AGACGTTAGGTTATTAGATATTTT BLAST psRNATarget
Ll_transcript_237731; FTRINITY_DN54409_c1_g4_i13 1191 1214 AAGTTTTGGGTTTTCAGGTGTTTT BLAST psRNATarget
Ll_transcript_237726; FTRINITY_DN54409_c1_g4_i11 1191 1214 AAGTTTTGGGTTTTCAGGTGTTTT BLAST psRNATarget
Ll_transcript_237720; FTRINITY_DN54409_c1_g4_i8 1427 1450 AAGTTTTGGGTTTTCAGGTGTTTT BLAST psRNATarget
Ll_transcript_237725; FTRINITY_DN54409_c1_g4_i10 1427 1450 AAGTTTTGGGTTTTCAGGTGTTTT BLAST psRNATarget
Ll_transcript_237719; FTRINITY_DN54409_c1_g4_i7 1191 1214 AAGTTTTGGGTTTTCAGGTGTTTT BLAST psRNATarget
Ll_transcript_237717; FTRINITY_DN54409_c1_g4_i6 1191 1214 AAGTTTTGGGTTTTCAGGTGTTTT BLAST psRNATarget
Ll_transcript_237722; FTRINITY_DN54409_c1_g4_i9 1427 1450 AAGTTTTGGGTTTTCAGGTGTTTT BLAST psRNATarget
Ll_transcript_237711; FTRINITY_DN54409_c1_g4_i2 1427 1450 AAGTTTTGGGTTTTCAGGTGTTTT BLAST psRNATarget
Ll_transcript_61892; FTRINITY_DN39171_c0_g1_i1 134 157 TTATTTCAGGATGTCAGATGTTCT BLAST psRNATarget
Ll_transcript_60727; FTRINITY_DN56299_c4_g2_i5 108 131 CAATTTCAGTTTGTCAAATGTTTT BLAST psRNATarget
Ll_transcript_225023; FTRINITY_DN56176_c4_g4_i1 1312 1335 TACGTTTAGGTTTTTGGATGTTTT BLAST psRNATarget
Ll_transcript_206828; FTRINITY_DN52665_c2_g1_i1 161 184 CTTGTTTATGTTATCAGATGATTT BLAST psRNATarget
Ll_transcript_78954; FTRINITY_DN58132_c0_g1_i19 1657 1680 AAGTTTCAGGTTATTAGTTTTTTT BLAST psRNATarget
Ll_transcript_239866; FTRINITY_DN22641_c0_g1_i1 387 410 ATGTTTCTGGTTATTGTATGTTTT BLAST psRNATarget
Ll_transcript_126392; FTRINITY_DN55613_c4_g3_i1 279 302 GTATTTCAGGTTATCATGTTTTTT BLAST psRNATarget
Ll_transcript_165892; FTRINITY_DN80071_c0_g1_i1 27 50 TGATTTCAGATTATTAGGTTTTTT BLAST psRNATarget
Ll_transcript_102642; FTRINITY_DN54998_c5_g1_i3 959 982 CATCTTCAGGTTATTTAATGTTTT BLAST psRNATarget
Ll_transcript_202837; FTRINITY_DN56444_c1_g4_i2 69 92 ATGTATTAGTTTATTATATGTTTT BLAST psRNATarget
Ll_transcript_102648; FTRINITY_DN54998_c5_g1_i9 959 982 CATCTTCAGGTTATTTAATGTTTT BLAST psRNATarget
Ll_transcript_158761; FTRINITY_DN54797_c5_g1_i3 2693 2716 CCACTCCAGGTTATTGGATCTTTT BLAST psRNATarget
Ll_transcript_158766; FTRINITY_DN54797_c5_g1_i8 2765 2788 CCACTCCAGGTTATTGGATCTTTT BLAST psRNATarget
Ll_transcript_158789; FTRINITY_DN54797_c5_g1_i24 2789 2812 CCACTCCAGGTTATTGGATCTTTT BLAST psRNATarget
Ll_transcript_158758; FTRINITY_DN54797_c5_g1_i1 2861 2884 CCACTCCAGGTTATTGGATCTTTT BLAST psRNATarget
Ll_transcript_158781; FTRINITY_DN54797_c5_g1_i20 2927 2950 CCACTCCAGGTTATTGGATCTTTT BLAST psRNATarget
Ll_transcript_158763; FTRINITY_DN54797_c5_g1_i5 3023 3046 CCACTCCAGGTTATTGGATCTTTT BLAST psRNATarget
Ll_transcript_158764; FTRINITY_DN54797_c5_g1_i6 3077 3100 CCACTCCAGGTTATTGGATCTTTT BLAST psRNATarget
Ll_transcript_158779; FTRINITY_DN54797_c5_g1_i18 3101 3124 CCACTCCAGGTTATTGGATCTTTT BLAST psRNATarget
Ll_transcript_158771; FTRINITY_DN54797_c5_g1_i11 3173 3196 CCACTCCAGGTTATTGGATCTTTT BLAST psRNATarget
Ll_transcript_424745; TRINITY_DN79480_c0_g1_i1 230 253 AGACGTTAGGTTATTAGATATTTT BLAST psRNATarget
Ll_transcript_389044; TRINITY_DN50994_c1_g1_i9 1261 1284 AAGTTTTGGGTTTTCAGGTGTTTT BLAST psRNATarget
Ll_transcript_389051; TRINITY_DN50994_c1_g1_i13 1497 1520 AAGTTTTGGGTTTTCAGGTGTTTT BLAST psRNATarget
Ll_transcript_389050; TRINITY_DN50994_c1_g1_i12 1261 1284 AAGTTTTGGGTTTTCAGGTGTTTT BLAST psRNATarget
Ll_transcript_389042; TRINITY_DN50994_c1_g1_i8 1497 1520 AAGTTTTGGGTTTTCAGGTGTTTT BLAST psRNATarget
Ll_transcript_365371; TRINITY_DN46399_c2_g6_i5 713 736 CAATTTCAGTTTGTCAAATGTTTT BLAST psRNATarget
Ll_transcript_365381; TRINITY_DN46399_c2_g6_i7 713 736 CAATTTCAGTTTGTCAAATGTTTT BLAST psRNATarget
Ll_transcript_365366; TRINITY_DN46399_c2_g6_i2 835 858 CAATTTCAGTTTGTCAAATGTTTT BLAST psRNATarget
Ll_transcript_340293; TRINITY_DN44184_c0_g1_i1 1272 1295 TACGTTTAGGTTTTTGGATGTTTT BLAST psRNATarget
Ll_transcript_416745; TRINITY_DN49661_c0_g3_i1 62 85 CTTGTTTATGTTATCAGATGATTT BLAST psRNATarget
Ll_transcript_368091; TRINITY_DN48685_c4_g1_i9 80 103 CCTTTTCGGGTTGTTGGATGTTGT BLAST psRNATarget
Ll_transcript_368088; TRINITY_DN48685_c4_g1_i7 80 103 CCTTTTCGGGTTGTTGGATGTTGT BLAST psRNATarget
Ll_transcript_382246; TRINITY_DN51430_c1_g1_i9 1671 1694 AAGTTTCAGGTTATTAGTTTTTTT BLAST psRNATarget
Ll_transcript_382248; TRINITY_DN51430_c1_g1_i11 1671 1694 AAGTTTCAGGTTATTAGTTTTTTT BLAST psRNATarget
Ll_transcript_382242; TRINITY_DN51430_c1_g1_i5 1671 1694 AAGTTTCAGGTTATTAGTTTTTTT BLAST psRNATarget
Ll_transcript_513493; TRINITY_DN46876_c0_g2_i2 1034 1057 ATGTTTCTGGTTATTGTATGTTTT BLAST psRNATarget
Ll_transcript_387542; TRINITY_DN50936_c5_g1_i1 369 392 GTATTTCAGGTTATCATGTTTTTT BLAST psRNATarget
Ll_transcript_498660; TRINITY_DN50242_c1_g1_i26 407 430 ATGTATTAGTTTATTATATGTTTT BLAST psRNATarget
Ll_transcript_455104; TRINITY_DN49723_c4_g1_i4 954 977 CATCTTCAGGTTATTTAATGTTTT BLAST psRNATarget
Ll_transcript_397340; TRINITY_DN51915_c1_g1_i18 2845 2868 CCACTCCAGGTTATTGGATCTTTT BLAST psRNATarget
Ll_transcript_397300; TRINITY_DN51915_c1_g1_i3 2917 2940 CCACTCCAGGTTATTGGATCTTTT BLAST psRNATarget
Ll_transcript_397322; TRINITY_DN51915_c1_g1_i10 3157 3180 CCACTCCAGGTTATTGGATCTTTT BLAST psRNATarget
Ll_transcript_397328; TRINITY_DN51915_c1_g1_i13 3858 3881 CCACTCCAGGTTATTGGATCTTTT BLAST psRNATarget

Expression of miRNA 1


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)