miRNA 100 details

Id Micro100
SequenceCGCTATCCATCCTGAGTTTCA 
Annotated namesath-miR390a-3p; aly-miR390a-3p; sly-miR390b-3p; lja-miR390a-3p; lja-miR390b-3p; 
Annotated pre-miRNAgma-MIR390a

Targets of miRNA 100

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_78347; FTRINITY_DN85751_c0_g1_i1 172 192 GCAGACTTAGGATGGATAGCT BLAST psRNATarget
Ll_transcript_45453; FTRINITY_DN46265_c0_g1_i1 3 23 TAAAGCTCAGGAGGGATAGCG BLAST psRNATarget
Ll_transcript_45168; FTRINITY_DN54182_c6_g1_i1 88 108 TTAAGCTCAGGAGGGATAGCG BLAST psRNATarget
Ll_transcript_43886; FTRINITY_DN54151_c4_g1_i1 118 138 TTAAGCTCAGGAGGGATAGCG BLAST psRNATarget
Ll_transcript_14763; FTRINITY_DN59268_c0_g1_i1 147 167 GAAGGCTCAGGATGGATTGTG BLAST psRNATarget
Ll_transcript_107859; FTRINITY_DN86009_c0_g1_i1 106 126 TGGAACTCAGGGTGAATGGTG BLAST psRNATarget
Ll_transcript_178121; FTRINITY_DN58607_c5_g9_i2 589 609 TGAAATTAAGGATGGATGGAG BLAST psRNATarget
Ll_transcript_162954; FTRINITY_DN53219_c1_g1_i3 132 152 TTCAGTTCAGGATGGGTGGTG BLAST psRNATarget
Ll_transcript_229888; FTRINITY_DN61821_c0_g1_i1 243 263 TAAAATTTAGAGTGGATAGTG BLAST psRNATarget
Ll_transcript_162952; FTRINITY_DN53219_c1_g1_i1 860 880 TTCAGTTCAGGATGGGTGGTG BLAST psRNATarget
Ll_transcript_11172; FTRINITY_DN56894_c1_g2_i8 1 20 CAAACTTAGGATTGATAGAG BLAST psRNATarget
Ll_transcript_106819; FTRINITY_DN52969_c4_g1_i14 238 258 ACAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_106818; FTRINITY_DN52969_c4_g1_i13 238 258 ACAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_106816; FTRINITY_DN52969_c4_g1_i12 238 258 ACAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_11178; FTRINITY_DN56894_c1_g2_i12 1 20 CAAACTTAGGATTGATAGAG BLAST psRNATarget
Ll_transcript_106805; FTRINITY_DN52969_c4_g1_i2 238 258 ACAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_106804; FTRINITY_DN52969_c4_g1_i1 238 258 ACAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_334964; TRINITY_DN74460_c0_g1_i1 142 162 GCAGACTTAGGATGGATAGCT BLAST psRNATarget
Ll_transcript_366924; TRINITY_DN46364_c1_g1_i2 114 134 TTAAGCTCAGGAGGGATAGCG BLAST psRNATarget
Ll_transcript_282897; TRINITY_DN46151_c3_g5_i1 106 126 TTAAGCTCAGGAGGGATAGCG BLAST psRNATarget
Ll_transcript_462527; TRINITY_DN75526_c0_g1_i1 112 132 GAAGGCTCAGGATGGATTGTG BLAST psRNATarget
Ll_transcript_428103; TRINITY_DN39232_c0_g1_i1 241 261 TAAAATTTAGAGTGGATAGTG BLAST psRNATarget
Ll_transcript_503203; TRINITY_DN36055_c0_g1_i1 29 49 TCAAACTTAGGATTGATAGAG BLAST psRNATarget
Ll_transcript_441775; TRINITY_DN47827_c0_g1_i10 655 675 TTCAGTTCAGGATGGGTGGTG BLAST psRNATarget
Ll_transcript_434343; TRINITY_DN46647_c0_g2_i3 239 259 ACAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_434348; TRINITY_DN46647_c0_g2_i5 239 259 ACAGATTCAAGGTGGATAGTG BLAST psRNATarget
Ll_transcript_434339; TRINITY_DN46647_c0_g2_i2 239 259 ACAGATTCAAGGTGGATAGTG BLAST psRNATarget

Expression of miRNA 100


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)