miRNA 108 details

Id Micro108
SequenceCGTGTTCTCAGGTCGCCCCTG 
Annotated namesppe-miR398b; 
Annotated pre-miRNANone

Targets of miRNA 108

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_44478; FTRINITY_DN54194_c0_g4_i5 3946 3966 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_44490; FTRINITY_DN54194_c0_g4_i9 4283 4303 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_44484; FTRINITY_DN54194_c0_g4_i7 4367 4387 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_44480; FTRINITY_DN54194_c0_g2_i4 602 622 CAGGGGCGACCTGAGAACACA BLAST psRNATarget
Ll_transcript_59476; FTRINITY_DN56226_c0_g3_i2 769 789 CATGGGCGACTTGAGAACACT BLAST psRNATarget
Ll_transcript_59484; FTRINITY_DN56226_c0_g3_i3 1094 1114 CATGGGCGACTTGAGAACACT BLAST psRNATarget
Ll_transcript_202570; FTRINITY_DN56475_c2_g5_i1 28 48 AAAGGGCGCCTTGAGAACACG BLAST psRNATarget
Ll_transcript_202571; FTRINITY_DN56475_c2_g1_i12 576 596 AAAGGGCGCCTTGAGAACACG BLAST psRNATarget
Ll_transcript_202579; FTRINITY_DN56475_c2_g1_i20 576 596 AAAGGGCGCCTTGAGAACACG BLAST psRNATarget
Ll_transcript_202575; FTRINITY_DN56475_c2_g1_i16 576 596 AAAGGGCGCCTTGAGAACACG BLAST psRNATarget
Ll_transcript_202556; FTRINITY_DN56475_c2_g1_i1 576 596 AAAGGGCGCCTTGAGAACACG BLAST psRNATarget
Ll_transcript_202578; FTRINITY_DN56475_c2_g1_i19 576 596 AAAGGGCGCCTTGAGAACACG BLAST psRNATarget
Ll_transcript_51114; FTRINITY_DN58856_c0_g4_i1 567 587 TGGGAGAGACCTGAGGACATG BLAST psRNATarget
Ll_transcript_210789; FTRINITY_DN58335_c3_g3_i3 86 106 TGGGAGAGACCTGAGGACATG BLAST psRNATarget
Ll_transcript_210791; FTRINITY_DN58335_c3_g4_i1 49 69 TGGGAGAGACCTGAGGACATG BLAST psRNATarget
Ll_transcript_210800; FTRINITY_DN58335_c3_g3_i5 86 106 TGGGAGAGACCTGAGGACATG BLAST psRNATarget
Ll_transcript_62669; FTRINITY_DN75431_c0_g1_i1 170 190 TCGGGACGACCTGAGAGCAAG BLAST psRNATarget
Ll_transcript_59477; FTRINITY_DN56226_c0_g4_i1 552 573 CAGTGGGCGACTTGAGAACACC BLAST psRNATarget
Ll_transcript_249103; FTRINITY_DN55958_c1_g4_i3 1015 1035 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_249093; FTRINITY_DN55958_c1_g4_i1 1647 1667 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_249105; FTRINITY_DN55958_c1_g4_i4 1766 1786 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_249100; FTRINITY_DN55958_c1_g4_i2 2078 2098 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_202560; FTRINITY_DN56475_c2_g1_i5 583 603 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_202574; FTRINITY_DN56475_c2_g1_i15 583 603 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_202563; FTRINITY_DN56475_c2_g1_i8 583 603 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_202588; FTRINITY_DN56475_c2_g1_i29 583 603 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_202590; FTRINITY_DN56475_c2_g1_i31 583 603 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_422598; TRINITY_DN47985_c1_g2_i1 2203 2223 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_422607; TRINITY_DN47985_c1_g2_i3 2414 2434 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_422602; TRINITY_DN47985_c1_g2_i2 3145 3165 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_422606; TRINITY_DN47985_c1_g5_i1 184 204 CAGGGGCGACCTGAGAACACA BLAST psRNATarget
Ll_transcript_314489; TRINITY_DN46787_c4_g4_i1 779 799 CATGGGCGACTTGAGAACACT BLAST psRNATarget
Ll_transcript_344268; TRINITY_DN50424_c2_g1_i12 606 626 AAAGGGCGCCTTGAGAACACG BLAST psRNATarget
Ll_transcript_344253; TRINITY_DN50424_c2_g1_i1 606 626 AAAGGGCGCCTTGAGAACACG BLAST psRNATarget
Ll_transcript_344260; TRINITY_DN50424_c2_g1_i7 606 626 AAAGGGCGCCTTGAGAACACG BLAST psRNATarget
Ll_transcript_352946; TRINITY_DN49462_c2_g1_i2 568 588 TGGGAGAGACCTGAGGACATG BLAST psRNATarget
Ll_transcript_352958; TRINITY_DN49462_c2_g1_i4 658 678 TGGGAGAGACCTGAGGACATG BLAST psRNATarget
Ll_transcript_314490; TRINITY_DN46787_c4_g1_i2 904 925 CAGTGGGCGACTTGAGAACACC BLAST psRNATarget
Ll_transcript_360610; TRINITY_DN47644_c4_g6_i1 1601 1621 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_360618; TRINITY_DN47644_c4_g6_i3 1721 1741 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_360615; TRINITY_DN47644_c4_g6_i2 2073 2093 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_360626; TRINITY_DN47644_c4_g6_i6 2369 2389 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_360620; TRINITY_DN47644_c4_g6_i4 2489 2509 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_314654; TRINITY_DN46732_c0_g3_i1 26 46 CATGAGGGATCTGAGAACACG BLAST psRNATarget
Ll_transcript_344278; TRINITY_DN50424_c2_g1_i20 320 340 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_344256; TRINITY_DN50424_c2_g1_i3 614 634 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_344273; TRINITY_DN50424_c2_g1_i16 614 634 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_344265; TRINITY_DN50424_c2_g1_i10 614 634 AAAGGTCGACTTGAGAACACA BLAST psRNATarget

Expression of miRNA 108


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)