Transcript | Ll_transcript_486922 |
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CDS coordinates | 1346-4714 (+) |
Peptide sequence | MTNGNGFSMTLPTLDSKNYDRWRTQMNTIFRFQEVSEIVQNGFQELGENASEAQRTIYREAMKKDGKALFLIHQCVDGANFDKIASAKTAKDAWDSLEKSHEGAEKIKKVKLQTLRRKYEMLQMDEHESVATYLGKILSLTNQMKTCGKVFKVKSVIEKVLRTLTPKYDHIIVAIEESKDLENYKLEELQSSLEAHEQRLKERLGESNDDQALQAYQTKKGSGQWSKNKKGNLKCRNCQGSRGDEASTSASQRHLNSTTNPSCYRKNSNKNSVTRKKGDKSKVQCYNCRKYGHFAAECNEKRSISSRDEEVKLAQGNESDDEGHYLLMATIKNKAEETDVWYLDTGCSNHMTGKKDWFTSLDESTKSKIKFADNSAVTAEGIGKIMIQRKDGKKAFISNVLYVPKMKSNLISLGQLLEKGYSMEMKEGLLKVFDQDKNNILKAPLSTNRTFKIGIQASDQNCFLSTSETDSWLWHQRFGHLNFKSLNQLSRESMVLGLPQIKTPDQMCEDCISGKQTRNSFVSSIPSKTVQALELVHTDVCGPLETNTIGENRYFVTFLDDHTRKLWIYLMKNKSEVFEIFRRFKAQAENQSDTKLKRLRSDGGGEYVSAKLHELCTKEGIIHEVIAPYTPQHNGAAERANRTILNMARCMLKTKSLPKKFWGEAVSTAVHIINRSPTKRLDGKTPEEAWSGLKPSVSHFRVFGCICFRHVPEVSRKKLDERGEKLIFLGYHSTGSYKVFDPKNNKVLMSRDLKFDETQSWNWNAHTEESKDTHLQLDECNEEPEVTQPSVTTSSSQHTSHRLRQPPRRFNDYEVFHDSNISEDGDLVHMALLAEMEPVSVDEALKQPNWIEAMREELNSINKNNTWSLVELPRGKRAIKVKWIYKTKVNPEGAVIKFKARLVAKGFLQKEGLDYDEVFAPVARLETVRLVVAMASYNSWEIHQMDVKSAFLNGPLDKDVFVTQPPGFIAQGREELVYKLHKALYGLKQAPRAWNRRIDTFLKQVGFLKCSSEHGVYVKNKCRAEPLIVCLYVDDLLITCSNSSEIAVFKQQMRSEFEMTDLGELAYFLGIEFKRTKQGIVMHQSKYIGDVLKRFHMAECNAAHTPAETNLAKALIEEEKSVE |
ORF Type | 3prime_partial |
Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.06% of identity |
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Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.12% of identity |
Eggnog | - |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_020987654.1) |
Pfam | gag-polypeptide of LTR copia-type (PF14223.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |
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Alignmet by MSA Viewer