Transcript | Ll_transcript_481776 |
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CDS coordinates | 200-2737 (+) |
Peptide sequence | MDSQQSNLFDTASQPDAANDAYTFLEFNTQGDDFDYPEFHDPIRSPVSWPTPSDSLAEPSERGGGGNGAGSDHQSDASPVSATPGSATKGRSGSSAGGNSQMVDALVPGMSELNFEDTGDDDNFEYGKGDFTEHACKYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQMLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQTSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVLMQILS* |
ORF Type | complete |
Blastp | Regulator of nonsense transcripts 1 homolog from Arabidopsis with 87.16% of identity |
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Blastx | Regulator of nonsense transcripts 1 homolog from Arabidopsis with 80.67% of identity |
Eggnog | Helicase(COG1112) |
Kegg | Link to kegg annotations (AT5G47010) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019423136.1) |
Pfam | RNA helicase (UPF2 interacting domain) (PF09416.9) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |
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Alignmet by MSA Viewer