miRNA 153 details

Id Micro153
SequenceGCGTGCGAGGAGCCAAGCATG 
Annotated namesbdi-miR160a-3p; osa-miR160d-3p; 
Annotated pre-miRNANone

Targets of miRNA 153

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_186936; FTRINITY_DN51859_c0_g1_i2 656 676 TATGCTTTGTTCCTTGCATGC BLAST psRNATarget
Ll_transcript_186935; FTRINITY_DN51859_c0_g1_i1 1703 1723 TATGCTTTGTTCCTTGCATGC BLAST psRNATarget
Ll_transcript_163379; FTRINITY_DN53297_c4_g1_i6 1128 1148 TGTTTTTGGCTCTTTGCACGT BLAST psRNATarget
Ll_transcript_163364; FTRINITY_DN53297_c4_g1_i2 1131 1151 TGTTTTTGGCTCTTTGCACGT BLAST psRNATarget
Ll_transcript_430; FTRINITY_DN54651_c0_g5_i1 801 821 GTTGTTTGCCTTCTCGCATGC BLAST psRNATarget
Ll_transcript_235181; FTRINITY_DN52892_c0_g2_i6 107 127 GAGGTTTTGCTTCTCGCACGC BLAST psRNATarget
Ll_transcript_235166; FTRINITY_DN52892_c0_g2_i3 107 127 GAGGTTTTGCTTCTCGCACGC BLAST psRNATarget
Ll_transcript_235183; FTRINITY_DN52892_c0_g2_i8 107 127 GAGGTTTTGCTTCTCGCACGC BLAST psRNATarget
Ll_transcript_235180; FTRINITY_DN52892_c0_g2_i5 107 127 GAGGTTTTGCTTCTCGCACGC BLAST psRNATarget
Ll_transcript_205721; FTRINITY_DN56922_c1_g1_i8 2332 2352 CATGTTTGGCTCTTTGAATGC BLAST psRNATarget
Ll_transcript_205719; FTRINITY_DN56922_c1_g1_i6 3217 3237 CATGTTTGGCTCTTTGAATGC BLAST psRNATarget
Ll_transcript_133688; FTRINITY_DN17175_c0_g1_i1 519 539 TGTGCCTGGCTCCCCGTATGC BLAST psRNATarget
Ll_transcript_42798; FTRINITY_DN54199_c1_g1_i1 23 43 ATTACTTGGCTTCTTGCATGG BLAST psRNATarget
Ll_transcript_145929; FTRINITY_DN59050_c1_g2_i2 154 174 ATTACTTGGCTTCTTGCATGG BLAST psRNATarget
Ll_transcript_145922; FTRINITY_DN59050_c1_g2_i1 230 250 ATTACTTGGCTTCTTGCATGG BLAST psRNATarget
Ll_transcript_145936; FTRINITY_DN59050_c1_g2_i4 944 964 ATTACTTGGCTTCTTGCATGG BLAST psRNATarget
Ll_transcript_173475; FTRINITY_DN52194_c2_g4_i1 362 382 CCTCCTTGACTTCTCGCACGT BLAST psRNATarget
Ll_transcript_173476; FTRINITY_DN52194_c2_g4_i2 362 382 CCTCCTTGACTTCTCGCACGT BLAST psRNATarget
Ll_transcript_523205; TRINITY_DN12149_c0_g1_i1 916 936 GATGTTTGGTTTCTTGCATGC BLAST psRNATarget
Ll_transcript_523206; TRINITY_DN12149_c0_g1_i2 1024 1044 GATGTTTGGTTTCTTGCATGC BLAST psRNATarget
Ll_transcript_368435; TRINITY_DN48635_c3_g3_i2 1996 2016 TGTTTTTGGCTCTTTGCACGT BLAST psRNATarget
Ll_transcript_293325; TRINITY_DN49174_c0_g1_i2 839 859 GTTGTTTGCCTTCTCGCATGC BLAST psRNATarget
Ll_transcript_316577; TRINITY_DN46752_c1_g2_i5 44 64 GAGGTTTTGCTTCTCGCACGC BLAST psRNATarget
Ll_transcript_316579; TRINITY_DN46752_c1_g2_i6 44 64 GAGGTTTTGCTTCTCGCACGC BLAST psRNATarget
Ll_transcript_493341; TRINITY_DN52804_c0_g2_i1 76 96 CATGTTTGTCTCTTTGCACGT BLAST psRNATarget
Ll_transcript_493342; TRINITY_DN52804_c0_g2_i2 76 96 CATGTTTGTCTCTTTGCACGT BLAST psRNATarget
Ll_transcript_317831; TRINITY_DN62719_c0_g1_i1 161 181 TATTCTCGGTTTCTCGCGCGC BLAST psRNATarget
Ll_transcript_351713; TRINITY_DN42537_c0_g1_i1 226 246 TGTGCCTGGCTCCCCGTATGC BLAST psRNATarget
Ll_transcript_294266; TRINITY_DN55165_c0_g1_i1 82 102 CCAGTGTGGCTTCTCGCGCGC BLAST psRNATarget
Ll_transcript_505768; TRINITY_DN52550_c0_g1_i18 179 199 ATTACTTGGCTTCTTGCATGG BLAST psRNATarget
Ll_transcript_390839; TRINITY_DN46453_c1_g2_i2 21 41 ATTACTTGGCTTCTTGCATGG BLAST psRNATarget
Ll_transcript_390838; TRINITY_DN46453_c1_g2_i1 21 41 ATTACTTGGCTTCTTGCATGG BLAST psRNATarget
Ll_transcript_282145; TRINITY_DN46155_c3_g2_i1 487 507 CCTCCTTGACTTCTCGCACGT BLAST psRNATarget
Ll_transcript_282150; TRINITY_DN46155_c3_g2_i6 487 507 CCTCCTTGACTTCTCGCACGT BLAST psRNATarget

Expression of miRNA 153


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)