miRNA 159 details

Id Micro159
SequenceGCTCACTGCTCTATCTGTCAGA 
Annotated namesaly-miR156c-3p; ath-miR156c-3p; bra-miR156c-3p; bra-miR156g-3p; 
Annotated pre-miRNANone

Targets of miRNA 159

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_225926; FTRINITY_DN56144_c1_g2_i7 1206 1227 ACAGACAGATAGAGCAGTGAGT BLAST psRNATarget
Ll_transcript_225921; FTRINITY_DN56144_c1_g2_i3 1605 1626 ACAGACAGATAGAGCAGTGAGT BLAST psRNATarget
Ll_transcript_225928; FTRINITY_DN56144_c1_g2_i8 1678 1699 ACAGACAGATAGAGCAGTGAGT BLAST psRNATarget
Ll_transcript_225923; FTRINITY_DN56144_c1_g2_i4 1791 1812 ACAGACAGATAGAGCAGTGAGT BLAST psRNATarget
Ll_transcript_61176; FTRINITY_DN56275_c2_g4_i1 315 336 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_251699; FTRINITY_DN52599_c1_g2_i9 1160 1181 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_251688; FTRINITY_DN52599_c1_g2_i4 1213 1234 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_251706; FTRINITY_DN52599_c1_g2_i12 1160 1181 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_251708; FTRINITY_DN52599_c1_g2_i13 1494 1515 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_251717; FTRINITY_DN52599_c1_g2_i17 1508 1529 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_251684; FTRINITY_DN52599_c1_g2_i2 1508 1529 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_251689; FTRINITY_DN52599_c1_g2_i5 1789 1810 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_251718; FTRINITY_DN52599_c1_g2_i18 1789 1810 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_247853; FTRINITY_DN87753_c0_g1_i1 266 287 CCATGCAGATCGAGCAGTGAGC BLAST psRNATarget
Ll_transcript_205273; FTRINITY_DN56958_c1_g2_i11 926 947 GAAGACAGGTAGATCAGTGGGT BLAST psRNATarget
Ll_transcript_100668; FTRINITY_DN57137_c0_g2_i12 2283 2304 TAAGATGGATAGAGCAGTGAAT BLAST psRNATarget
Ll_transcript_100675; FTRINITY_DN57137_c0_g2_i15 2415 2436 TAAGATGGATAGAGCAGTGAAT BLAST psRNATarget
Ll_transcript_100678; FTRINITY_DN57137_c0_g2_i18 2619 2640 TAAGATGGATAGAGCAGTGAAT BLAST psRNATarget
Ll_transcript_100664; FTRINITY_DN57137_c0_g2_i10 2774 2795 TAAGATGGATAGAGCAGTGAAT BLAST psRNATarget
Ll_transcript_769; FTRINITY_DN54695_c0_g2_i1 2510 2531 TCGGATACATGAAGCAGTGAGC BLAST psRNATarget
Ll_transcript_776; FTRINITY_DN54695_c0_g2_i4 2606 2627 TCGGATACATGAAGCAGTGAGC BLAST psRNATarget
Ll_transcript_79910; FTRINITY_DN58165_c2_g1_i12 348 369 CCATGCAGATAGAGAGGTGAGC BLAST psRNATarget
Ll_transcript_79908; FTRINITY_DN58165_c2_g1_i10 348 369 CCATGCAGATAGAGAGGTGAGC BLAST psRNATarget
Ll_transcript_312696; TRINITY_DN46961_c0_g1_i12 1533 1554 ACAGACAGATAGAGCAGTGAGT BLAST psRNATarget
Ll_transcript_513651; TRINITY_DN46854_c1_g2_i7 2866 2887 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_513666; TRINITY_DN46854_c1_g2_i12 2923 2944 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_513637; TRINITY_DN46854_c1_g2_i2 3173 3194 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_513662; TRINITY_DN46854_c1_g2_i11 3393 3414 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_513636; TRINITY_DN46854_c1_g2_i1 3586 3607 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_513659; TRINITY_DN46854_c1_g2_i9 3643 3664 TATGACTGGTAGGGCAGTGAGG BLAST psRNATarget
Ll_transcript_488672; TRINITY_DN50372_c1_g1_i9 1002 1023 GAAGACAGGTAGATCAGTGGGT BLAST psRNATarget
Ll_transcript_497788; TRINITY_DN50207_c1_g1_i11 2229 2250 TAAGATGGATAGAGCAGTGAAT BLAST psRNATarget
Ll_transcript_497787; TRINITY_DN50207_c1_g1_i10 2244 2265 TAAGATGGATAGAGCAGTGAAT BLAST psRNATarget
Ll_transcript_497798; TRINITY_DN50207_c1_g1_i19 2271 2292 TAAGATGGATAGAGCAGTGAAT BLAST psRNATarget
Ll_transcript_497799; TRINITY_DN50207_c1_g1_i20 2402 2423 TAAGATGGATAGAGCAGTGAAT BLAST psRNATarget
Ll_transcript_497794; TRINITY_DN50207_c1_g1_i16 2342 2363 TAAGATGGATAGAGCAGTGAAT BLAST psRNATarget
Ll_transcript_497782; TRINITY_DN50207_c1_g1_i8 2357 2378 TAAGATGGATAGAGCAGTGAAT BLAST psRNATarget
Ll_transcript_497785; TRINITY_DN50207_c1_g1_i9 2433 2454 TAAGATGGATAGAGCAGTGAAT BLAST psRNATarget
Ll_transcript_497777; TRINITY_DN50207_c1_g1_i4 2452 2473 TAAGATGGATAGAGCAGTGAAT BLAST psRNATarget
Ll_transcript_457757; TRINITY_DN49908_c2_g1_i1 2527 2548 TCGGATACATGAAGCAGTGAGC BLAST psRNATarget
Ll_transcript_457758; TRINITY_DN49908_c2_g1_i2 2623 2644 TCGGATACATGAAGCAGTGAGC BLAST psRNATarget
Ll_transcript_457771; TRINITY_DN49908_c2_g1_i13 2639 2660 TCGGATACATGAAGCAGTGAGC BLAST psRNATarget
Ll_transcript_457773; TRINITY_DN49908_c2_g1_i15 2735 2756 TCGGATACATGAAGCAGTGAGC BLAST psRNATarget
Ll_transcript_457760; TRINITY_DN49908_c2_g1_i4 3352 3373 TCGGATACATGAAGCAGTGAGC BLAST psRNATarget
Ll_transcript_529993; TRINITY_DN51080_c0_g2_i1 619 640 CCATGCAGATAGAGAGGTGAGC BLAST psRNATarget
Ll_transcript_383931; TRINITY_DN47210_c0_g2_i1 1123 1144 GCACACAGGTAGAGTAGTTAGC BLAST psRNATarget
Ll_transcript_529994; TRINITY_DN51080_c0_g2_i2 1605 1626 CCATGCAGATAGAGAGGTGAGC BLAST psRNATarget
Ll_transcript_530007; TRINITY_DN51080_c0_g2_i11 1605 1626 CCATGCAGATAGAGAGGTGAGC BLAST psRNATarget

Expression of miRNA 159


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)