miRNA 170 details

Id Micro170
SequenceGGAACGTTGGCTGGCTCGAGG 
Annotated namesata-miR166c-5p; 
Annotated pre-miRNANone

Targets of miRNA 170

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_260684; FTRINITY_DN46838_c0_g1_i1 976 996 TCTCGAGTCAGTCAACGTACC BLAST psRNATarget
Ll_transcript_239634; FTRINITY_DN16024_c0_g2_i1 112 132 CGTTGACCCAGTCAACGTTCT BLAST psRNATarget
Ll_transcript_17694; FTRINITY_DN54573_c4_g2_i12 458 478 TCTCGAACCAGCCAATGGTTC BLAST psRNATarget
Ll_transcript_17680; FTRINITY_DN54573_c4_g2_i4 458 478 TCTCGAACCAGCCAATGGTTC BLAST psRNATarget
Ll_transcript_192293; FTRINITY_DN55743_c0_g3_i1 1474 1494 TCTCAAGCCAGCAAATGTTCT BLAST psRNATarget
Ll_transcript_192301; FTRINITY_DN55743_c0_g3_i2 1452 1472 TCTCAAGCCAGCAAATGTTCT BLAST psRNATarget
Ll_transcript_11497; FTRINITY_DN56857_c1_g2_i2 976 996 TTTCGGGCAAGTCAGTGTTCC BLAST psRNATarget
Ll_transcript_11523; FTRINITY_DN56857_c1_g2_i10 976 996 TTTCGGGCAAGTCAGTGTTCC BLAST psRNATarget
Ll_transcript_11506; FTRINITY_DN56857_c1_g2_i5 976 996 TTTCGGGCAAGTCAGTGTTCC BLAST psRNATarget
Ll_transcript_164656; FTRINITY_DN53203_c0_g4_i1 781 801 ACTTGAATCAGTCAGTGTTCC BLAST psRNATarget
Ll_transcript_164660; FTRINITY_DN53203_c0_g4_i2 858 878 ACTTGAATCAGTCAGTGTTCC BLAST psRNATarget
Ll_transcript_268321; FTRINITY_DN55868_c21_g1_i4 131 151 CACCGAGCCAGCTAATCTTCC BLAST psRNATarget
Ll_transcript_268318; FTRINITY_DN55868_c21_g1_i2 131 151 CACCGAGCCAGCTAATCTTCC BLAST psRNATarget
Ll_transcript_218435; FTRINITY_DN56339_c0_g1_i11 939 959 AATCGAGTCAGCTAAAGTTCG BLAST psRNATarget
Ll_transcript_218425; FTRINITY_DN56339_c0_g1_i3 939 959 AATCGAGTCAGCTAAAGTTCG BLAST psRNATarget
Ll_transcript_218436; FTRINITY_DN56339_c0_g1_i12 939 959 AATCGAGTCAGCTAAAGTTCG BLAST psRNATarget
Ll_transcript_184763; FTRINITY_DN57497_c1_g1_i11 60 80 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_184783; FTRINITY_DN57497_c1_g1_i30 60 80 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_184769; FTRINITY_DN57497_c1_g1_i17 60 80 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_184755; FTRINITY_DN57497_c1_g1_i3 60 80 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_184792; FTRINITY_DN57497_c1_g1_i39 60 80 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_184773; FTRINITY_DN57497_c1_g1_i21 60 80 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_184758; FTRINITY_DN57497_c1_g1_i6 60 80 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_184786; FTRINITY_DN57497_c1_g1_i33 60 80 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_184770; FTRINITY_DN57497_c1_g1_i18 60 80 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_184787; FTRINITY_DN57497_c1_g1_i34 60 80 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_184788; FTRINITY_DN57497_c1_g1_i35 60 80 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_252454; FTRINITY_DN52581_c3_g2_i7 35 55 AAGCGTGCTGGCCAACGTTCT BLAST psRNATarget
Ll_transcript_252438; FTRINITY_DN52581_c3_g2_i4 543 563 AAGCGTGCTGGCCAACGTTCT BLAST psRNATarget
Ll_transcript_22226; FTRINITY_DN55182_c3_g6_i1 186 206 TGTTGAACCAGTTAGTGTTCC BLAST psRNATarget
Ll_transcript_3721; FTRINITY_DN50105_c0_g1_i3 610 629 TCTCATCCAGCTAACGTTCC BLAST psRNATarget
Ll_transcript_3720; FTRINITY_DN50105_c0_g1_i2 610 629 TCTCATCCAGCTAACGTTCC BLAST psRNATarget
Ll_transcript_3723; FTRINITY_DN50105_c0_g1_i5 525 544 TCTCATCCAGCTAACGTTCC BLAST psRNATarget
Ll_transcript_3719; FTRINITY_DN50105_c0_g1_i1 610 629 TCTCATCCAGCTAACGTTCC BLAST psRNATarget
Ll_transcript_470551; TRINITY_DN40486_c0_g3_i1 313 333 TCTCGAGTCAGTCAACGTACC BLAST psRNATarget
Ll_transcript_382837; TRINITY_DN72580_c0_g1_i1 64 84 CGTTGACCCAGTCAACGTTCT BLAST psRNATarget
Ll_transcript_427127; TRINITY_DN38794_c0_g1_i2 347 367 ACTTGAAGCAGCCAATGTTCC BLAST psRNATarget
Ll_transcript_370030; TRINITY_DN48630_c0_g12_i1 1474 1494 TCTCAAGCCAGCAAATGTTCT BLAST psRNATarget
Ll_transcript_370026; TRINITY_DN48630_c0_g11_i1 1478 1498 TCTCAAGCCAGCAAATGTTCT BLAST psRNATarget
Ll_transcript_315643; TRINITY_DN46795_c0_g2_i26 967 987 TTTCGGGCAAGTCAGTGTTCC BLAST psRNATarget
Ll_transcript_441567; TRINITY_DN47800_c1_g2_i3 456 476 TCTCGAACCAGCCAATGGTTC BLAST psRNATarget
Ll_transcript_441575; TRINITY_DN47800_c1_g2_i7 456 476 TCTCGAACCAGCCAATGGTTC BLAST psRNATarget
Ll_transcript_315629; TRINITY_DN46795_c0_g2_i17 967 987 TTTCGGGCAAGTCAGTGTTCC BLAST psRNATarget
Ll_transcript_441573; TRINITY_DN47800_c1_g2_i6 456 476 TCTCGAACCAGCCAATGGTTC BLAST psRNATarget
Ll_transcript_315623; TRINITY_DN46795_c0_g2_i13 967 987 TTTCGGGCAAGTCAGTGTTCC BLAST psRNATarget
Ll_transcript_489089; TRINITY_DN50399_c1_g5_i1 839 859 ACTTGAATCAGTCAGTGTTCC BLAST psRNATarget
Ll_transcript_416784; TRINITY_DN49602_c0_g1_i12 640 660 AATCGAGTCAGCTAAAGTTCG BLAST psRNATarget
Ll_transcript_416770; TRINITY_DN49602_c0_g1_i3 1284 1304 AATCGAGTCAGCTAAAGTTCG BLAST psRNATarget
Ll_transcript_429466; TRINITY_DN52102_c1_g1_i25 7 27 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_429471; TRINITY_DN52102_c1_g1_i30 7 27 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_429453; TRINITY_DN52102_c1_g1_i16 7 27 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_429448; TRINITY_DN52102_c1_g1_i11 7 27 TGTTGAGCCAACCAATGTTTT BLAST psRNATarget
Ll_transcript_286098; TRINITY_DN48865_c2_g1_i1 453 473 AAGCGTGCTGGCCAACGTTCT BLAST psRNATarget
Ll_transcript_532253; TRINITY_DN50006_c6_g1_i2 765 784 TCTCATCCAGCTAACGTTCC BLAST psRNATarget
Ll_transcript_532254; TRINITY_DN50006_c6_g1_i3 765 784 TCTCATCCAGCTAACGTTCC BLAST psRNATarget

Expression of miRNA 170


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)