miRNA 178 details

Id Micro178
SequenceGGAATGTTGTCTGGCTCGGGG 
Annotated namesata-miR166d-5p; bdi-miR166b-5p; osa-miR166b-5p; zma-miR166a-5p; 
Annotated pre-miRNANone

Targets of miRNA 178

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_48953; FTRINITY_DN85319_c0_g1_i1 96 116 ACTCGAGCCAAACAACATTCC BLAST psRNATarget
Ll_transcript_137058; FTRINITY_DN58074_c0_g1_i14 1717 1737 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_137061; FTRINITY_DN58074_c0_g1_i16 2584 2604 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_137056; FTRINITY_DN58074_c0_g1_i13 2837 2857 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_137042; FTRINITY_DN58074_c0_g1_i8 2966 2986 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_137060; FTRINITY_DN58074_c0_g1_i15 3219 3239 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_66487; FTRINITY_DN6049_c0_g1_i1 19 39 AATCGATTCAGACAGCATTCC BLAST psRNATarget
Ll_transcript_99397; FTRINITY_DN57158_c0_g1_i7 174 194 GACCGACTCAGACAATATTTC BLAST psRNATarget
Ll_transcript_99400; FTRINITY_DN57158_c0_g1_i10 222 242 GACCGACTCAGACAATATTTC BLAST psRNATarget
Ll_transcript_99391; FTRINITY_DN57158_c0_g1_i1 458 478 GACCGACTCAGACAATATTTC BLAST psRNATarget
Ll_transcript_99398; FTRINITY_DN57158_c0_g1_i8 174 194 GACCGACTCAGACAATATTTC BLAST psRNATarget
Ll_transcript_99392; FTRINITY_DN57158_c0_g1_i2 458 478 GACCGACTCAGACAATATTTC BLAST psRNATarget
Ll_transcript_116211; FTRINITY_DN47263_c0_g1_i2 244 264 TTCTGAATCGGACAACATTCT BLAST psRNATarget
Ll_transcript_269265; FTRINITY_DN55845_c0_g5_i6 1163 1183 GGTTGAGTTGGACAACATTCT BLAST psRNATarget
Ll_transcript_269242; FTRINITY_DN55845_c0_g5_i1 1111 1131 GGTTGAGTTGGACAACATTCT BLAST psRNATarget
Ll_transcript_269263; FTRINITY_DN55845_c0_g5_i5 1163 1183 GGTTGAGTTGGACAACATTCT BLAST psRNATarget
Ll_transcript_269256; FTRINITY_DN55845_c0_g5_i2 1486 1506 GGTTGAGTTGGACAACATTCT BLAST psRNATarget
Ll_transcript_66945; FTRINITY_DN55063_c2_g1_i7 1568 1588 TGATGACCCAGATAACATTCC BLAST psRNATarget
Ll_transcript_66957; FTRINITY_DN55063_c2_g1_i18 1652 1672 TGATGACCCAGATAACATTCC BLAST psRNATarget
Ll_transcript_66952; FTRINITY_DN55063_c2_g1_i13 1678 1698 TGATGACCCAGATAACATTCC BLAST psRNATarget
Ll_transcript_66947; FTRINITY_DN55063_c2_g1_i9 2285 2305 TGATGACCCAGATAACATTCC BLAST psRNATarget
Ll_transcript_66958; FTRINITY_DN55063_c2_g1_i19 2369 2389 TGATGACCCAGATAACATTCC BLAST psRNATarget
Ll_transcript_66954; FTRINITY_DN55063_c2_g1_i15 2395 2415 TGATGACCCAGATAACATTCC BLAST psRNATarget
Ll_transcript_187491; FTRINITY_DN25814_c0_g1_i1 502 522 AGCAGAGCCAAACAACATTTC BLAST psRNATarget
Ll_transcript_99401; FTRINITY_DN57158_c0_g1_i11 222 242 GACCGACTCAGACAGTATTTC BLAST psRNATarget
Ll_transcript_99399; FTRINITY_DN57158_c0_g1_i9 274 294 GACCGACTCAGACAGTATTTC BLAST psRNATarget
Ll_transcript_99394; FTRINITY_DN57158_c0_g1_i4 274 294 GACCGACTCAGACAGTATTTC BLAST psRNATarget
Ll_transcript_99393; FTRINITY_DN57158_c0_g1_i3 274 294 GACCGACTCAGACAGTATTTC BLAST psRNATarget
Ll_transcript_99396; FTRINITY_DN57158_c0_g1_i6 222 242 GACCGACTCAGACAGTATTTC BLAST psRNATarget
Ll_transcript_269073; FTRINITY_DN55848_c0_g3_i2 94 114 TCCCGATTCGGACAACATTGC BLAST psRNATarget
Ll_transcript_269074; FTRINITY_DN55848_c0_g3_i3 94 114 TCCCGATTCGGACAACATTGC BLAST psRNATarget
Ll_transcript_227302; FTRINITY_DN56119_c4_g4_i2 247 267 ACTCCAGCCAGACCGCATTCC BLAST psRNATarget
Ll_transcript_227309; FTRINITY_DN56119_c4_g4_i5 247 267 ACTCCAGCCAGACCGCATTCC BLAST psRNATarget
Ll_transcript_164663; FTRINITY_DN53203_c0_g4_i3 43 63 ACTTGAATCGGACAGCATTCC BLAST psRNATarget
Ll_transcript_227304; FTRINITY_DN56119_c4_g4_i3 247 267 ACTCCAGCCAGACCGCATTCC BLAST psRNATarget
Ll_transcript_6294; FTRINITY_DN58501_c1_g3_i4 50 70 TGACGAGCCAAGCAGCATTCC BLAST psRNATarget
Ll_transcript_6316; FTRINITY_DN58501_c1_g3_i12 165 185 TGACGAGCCAAGCAGCATTCC BLAST psRNATarget
Ll_transcript_12713; FTRINITY_DN30122_c0_g1_i2 274 294 CATTGAGTCAGGCAAGATTCC BLAST psRNATarget
Ll_transcript_12712; FTRINITY_DN30122_c0_g1_i1 274 294 CATTGAGTCAGGCAAGATTCC BLAST psRNATarget
Ll_transcript_6311; FTRINITY_DN58501_c1_g3_i9 353 373 TGACGAGCCAAGCAGCATTCC BLAST psRNATarget
Ll_transcript_44004; FTRINITY_DN54173_c4_g4_i1 374 394 CTCTCATCCAGACAATATTTC BLAST psRNATarget
Ll_transcript_88905; FTRINITY_DN53948_c0_g2_i1 106 126 TCTCGCTCTAGACAACATTTC BLAST psRNATarget
Ll_transcript_6309; FTRINITY_DN58501_c1_g3_i8 165 185 TGACGAGCCAAGCAGCATTCC BLAST psRNATarget
Ll_transcript_103197; FTRINITY_DN54963_c2_g1_i4 919 939 CATTGAGCTAGATAACCTTCC BLAST psRNATarget
Ll_transcript_6315; FTRINITY_DN58501_c1_g3_i11 197 217 TGACGAGCCAAGCAGCATTCC BLAST psRNATarget
Ll_transcript_6303; FTRINITY_DN58501_c1_g3_i6 353 373 TGACGAGCCAAGCAGCATTCC BLAST psRNATarget
Ll_transcript_88914; FTRINITY_DN53948_c0_g2_i5 1231 1251 TCTCGCTCTAGACAACATTTC BLAST psRNATarget
Ll_transcript_88908; FTRINITY_DN53948_c0_g2_i3 1231 1251 TCTCGCTCTAGACAACATTTC BLAST psRNATarget
Ll_transcript_79599; FTRINITY_DN58148_c0_g1_i8 1265 1285 CTTCATGCCAGATAATATTCC BLAST psRNATarget
Ll_transcript_79592; FTRINITY_DN58148_c0_g1_i2 1265 1285 CTTCATGCCAGATAATATTCC BLAST psRNATarget
Ll_transcript_79601; FTRINITY_DN58148_c0_g1_i10 1265 1285 CTTCATGCCAGATAATATTCC BLAST psRNATarget
Ll_transcript_79603; FTRINITY_DN58148_c0_g1_i12 1265 1285 CTTCATGCCAGATAATATTCC BLAST psRNATarget
Ll_transcript_79597; FTRINITY_DN58148_c0_g1_i6 1265 1285 CTTCATGCCAGATAATATTCC BLAST psRNATarget
Ll_transcript_79605; FTRINITY_DN58148_c0_g1_i14 1265 1285 CTTCATGCCAGATAATATTCC BLAST psRNATarget
Ll_transcript_92333; FTRINITY_DN54877_c3_g1_i1 31 51 ATCTGACCCAGACAATAATCC BLAST psRNATarget
Ll_transcript_236969; FTRINITY_DN54400_c3_g3_i1 427 447 AGGCAAGCCAGATAACATTCA BLAST psRNATarget
Ll_transcript_218297; FTRINITY_DN56350_c1_g1_i1 1082 1102 GTCCAAGCTGGATGGCATTCC BLAST psRNATarget
Ll_transcript_242428; FTRINITY_DN53081_c0_g3_i1 915 935 GTCCGAGGCAGATGAAATTCC BLAST psRNATarget
Ll_transcript_177209; FTRINITY_DN58636_c0_g1_i2 393 413 CGGCGGTCTGGACAACATTCC BLAST psRNATarget
Ll_transcript_482550; TRINITY_DN49376_c1_g7_i1 179 199 CCTCGAGCCAAACAACATTCC BLAST psRNATarget
Ll_transcript_509268; TRINITY_DN48101_c1_g2_i2 2602 2622 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_509281; TRINITY_DN48101_c1_g2_i5 2984 3004 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_509263; TRINITY_DN48101_c1_g2_i1 3237 3257 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_509277; TRINITY_DN48101_c1_g2_i4 2602 2622 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_533429; TRINITY_DN50020_c0_g1_i4 239 259 GACCGACTCAGACAATATTTC BLAST psRNATarget
Ll_transcript_533431; TRINITY_DN50020_c0_g1_i6 159 179 GACCGACTCAGACAATATTTC BLAST psRNATarget
Ll_transcript_533432; TRINITY_DN50020_c0_g1_i7 239 259 GACCGACTCAGACAATATTTC BLAST psRNATarget
Ll_transcript_533426; TRINITY_DN50020_c0_g1_i2 239 259 GACCGACTCAGACAATATTTC BLAST psRNATarget
Ll_transcript_488996; TRINITY_DN50337_c3_g6_i2 143 163 TCTCAAGTTAGACAACATTTC BLAST psRNATarget
Ll_transcript_479813; TRINITY_DN52792_c5_g4_i2 716 736 GGTTGAGTTGGACAACATTCT BLAST psRNATarget
Ll_transcript_479822; TRINITY_DN52792_c5_g4_i4 793 813 GGTTGAGTTGGACAACATTCT BLAST psRNATarget
Ll_transcript_479828; TRINITY_DN52792_c5_g4_i5 1039 1059 GGTTGAGTTGGACAACATTCT BLAST psRNATarget
Ll_transcript_479816; TRINITY_DN52792_c5_g4_i3 1088 1108 GGTTGAGTTGGACAACATTCT BLAST psRNATarget
Ll_transcript_479812; TRINITY_DN52792_c5_g4_i1 1326 1346 GGTTGAGTTGGACAACATTCT BLAST psRNATarget
Ll_transcript_479834; TRINITY_DN52792_c5_g4_i6 1403 1423 GGTTGAGTTGGACAACATTCT BLAST psRNATarget
Ll_transcript_413965; TRINITY_DN49640_c0_g2_i1 531 551 TGATGACCCAGATAACATTCC BLAST psRNATarget
Ll_transcript_413987; TRINITY_DN49640_c0_g2_i2 1248 1268 TGATGACCCAGATAACATTCC BLAST psRNATarget
Ll_transcript_533428; TRINITY_DN50020_c0_g1_i3 222 242 GACCGACTCAGACAGTATTTC BLAST psRNATarget
Ll_transcript_533425; TRINITY_DN50020_c0_g1_i1 305 325 GACCGACTCAGACAGTATTTC BLAST psRNATarget
Ll_transcript_533430; TRINITY_DN50020_c0_g1_i5 305 325 GACCGACTCAGACAGTATTTC BLAST psRNATarget
Ll_transcript_353318; TRINITY_DN49451_c5_g2_i4 3775 3795 AGCAGAGCCAAACAACATTTC BLAST psRNATarget
Ll_transcript_353316; TRINITY_DN49451_c5_g2_i2 3977 3997 AGCAGAGCCAAACAACATTTC BLAST psRNATarget
Ll_transcript_460983; TRINITY_DN51112_c3_g1_i1 16 36 TCCCGACTCGGACAAGATTCC BLAST psRNATarget
Ll_transcript_491292; TRINITY_DN67501_c0_g1_i1 10 30 ACCCGTGCCGGACAACGTACC BLAST psRNATarget
Ll_transcript_290976; TRINITY_DN49131_c4_g3_i1 112 132 CATTGAGCTAGATAACCTTCC BLAST psRNATarget
Ll_transcript_325298; TRINITY_DN33064_c0_g1_i1 239 259 CATTGAGTCAGGCAAGATTCC BLAST psRNATarget
Ll_transcript_403172; TRINITY_DN50506_c1_g5_i5 321 341 TGACGAGCCAAGCAGCATTCC BLAST psRNATarget
Ll_transcript_403158; TRINITY_DN50506_c1_g5_i2 529 549 TGACGAGCCAAGCAGCATTCC BLAST psRNATarget
Ll_transcript_403156; TRINITY_DN50506_c1_g5_i1 529 549 TGACGAGCCAAGCAGCATTCC BLAST psRNATarget
Ll_transcript_403170; TRINITY_DN50506_c1_g5_i4 626 646 TGACGAGCCAAGCAGCATTCC BLAST psRNATarget
Ll_transcript_359719; TRINITY_DN47615_c0_g3_i3 1235 1255 TCTCGCTCTAGACAACATTTC BLAST psRNATarget
Ll_transcript_399273; TRINITY_DN51945_c0_g1_i4 1245 1265 CTTCATGCCAGATAATATTCC BLAST psRNATarget
Ll_transcript_359725; TRINITY_DN47615_c0_g3_i4 1235 1255 TCTCGCTCTAGACAACATTTC BLAST psRNATarget
Ll_transcript_359710; TRINITY_DN47615_c0_g3_i1 1265 1285 TCTCGCTCTAGACAACATTTC BLAST psRNATarget
Ll_transcript_399276; TRINITY_DN51945_c0_g1_i6 1277 1297 CTTCATGCCAGATAATATTCC BLAST psRNATarget
Ll_transcript_399270; TRINITY_DN51945_c0_g1_i1 1277 1297 CTTCATGCCAGATAATATTCC BLAST psRNATarget
Ll_transcript_399271; TRINITY_DN51945_c0_g1_i2 1277 1297 CTTCATGCCAGATAATATTCC BLAST psRNATarget
Ll_transcript_399278; TRINITY_DN51945_c0_g1_i8 1277 1297 CTTCATGCCAGATAATATTCC BLAST psRNATarget
Ll_transcript_324217; TRINITY_DN45368_c1_g1_i1 279 299 AGGCAAGCCAGATAACATTCA BLAST psRNATarget
Ll_transcript_456505; TRINITY_DN49988_c0_g4_i1 361 381 GCCTCTGCCAGACAACGTTTC BLAST psRNATarget
Ll_transcript_452208; TRINITY_DN43205_c0_g2_i1 1088 1108 GTCCAAGCTGGATGGCATTCC BLAST psRNATarget
Ll_transcript_319897; TRINITY_DN46239_c0_g3_i1 829 849 GTCCGAGGCAGATGAAATTCC BLAST psRNATarget
Ll_transcript_529114; TRINITY_DN51007_c1_g6_i1 163 183 CGGCGGTCTGGACAACATTCC BLAST psRNATarget
Ll_transcript_458130; TRINITY_DN49967_c2_g1_i12 7 27 CGGCGGTCTGGACAACATTCC BLAST psRNATarget
Ll_transcript_339679; TRINITY_DN76157_c0_g1_i1 102 123 TACCGAGTCCAGAAAACATTCC BLAST psRNATarget

Expression of miRNA 178


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)