miRNA 183 details

Id Micro183
SequenceGGAGGCAGCGGTTCATCGATC 
Annotated namesaly-miR162a-5p; aly-miR162b-5p; bra-miR162-5p; stu-miR162a-5p; stu-miR162b-5p; 
Annotated pre-miRNANone

Targets of miRNA 183

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_189508; FTRINITY_DN56795_c7_g1_i1 151 171 CCTCGATGAACAGCTGCTTTC BLAST psRNATarget
Ll_transcript_83539; FTRINITY_DN56685_c1_g2_i6 118 138 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_83534; FTRINITY_DN56685_c1_g2_i1 323 343 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_83535; FTRINITY_DN56685_c1_g2_i2 602 622 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_83536; FTRINITY_DN56685_c1_g2_i3 611 631 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_5726; FTRINITY_DN58502_c0_g3_i5 139 159 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_5708; FTRINITY_DN58502_c0_g3_i1 139 159 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_5730; FTRINITY_DN58502_c0_g3_i8 139 159 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_5732; FTRINITY_DN58502_c0_g3_i10 718 738 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_5717; FTRINITY_DN58502_c0_g3_i2 718 738 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_5731; FTRINITY_DN58502_c0_g3_i9 635 655 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_5722; FTRINITY_DN58502_c0_g3_i4 718 738 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_163963; FTRINITY_DN53298_c0_g1_i3 1572 1592 CTTCAATGAATTGCTGCTTTC BLAST psRNATarget
Ll_transcript_163961; FTRINITY_DN53298_c0_g1_i1 1663 1683 CTTCAATGAATTGCTGCTTTC BLAST psRNATarget
Ll_transcript_163969; FTRINITY_DN53298_c0_g1_i9 1709 1729 CTTCAATGAATTGCTGCTTTC BLAST psRNATarget
Ll_transcript_185005; FTRINITY_DN57430_c2_g2_i4 2357 2377 TTTCCATGAACTGCTTCCTCC BLAST psRNATarget
Ll_transcript_185004; FTRINITY_DN57430_c2_g2_i3 2431 2451 TTTCCATGAACTGCTTCCTCC BLAST psRNATarget
Ll_transcript_185006; FTRINITY_DN57430_c2_g2_i5 2357 2377 TTTCCATGAACTGCTTCCTCC BLAST psRNATarget
Ll_transcript_147871; FTRINITY_DN85646_c0_g1_i1 49 69 GTTTCATCAACTGCTGCCTCC BLAST psRNATarget
Ll_transcript_167892; FTRINITY_DN57304_c1_g5_i1 913 933 GGTCAATGGACTGCTGTTTCT BLAST psRNATarget
Ll_transcript_168336; FTRINITY_DN57377_c2_g1_i12 251 271 CATCAATGGACCGATGCTTCC BLAST psRNATarget
Ll_transcript_168321; FTRINITY_DN57377_c2_g1_i3 251 271 CATCAATGGACCGATGCTTCC BLAST psRNATarget
Ll_transcript_108201; FTRINITY_DN47790_c0_g2_i2 863 883 CGTCGATGAGCCTCAGCCTCC BLAST psRNATarget
Ll_transcript_168319; FTRINITY_DN57377_c2_g1_i2 251 271 CATCAATGGACCGATGCTTCC BLAST psRNATarget
Ll_transcript_168351; FTRINITY_DN57377_c2_g1_i17 251 271 CATCAATGGACCGATGCTTCC BLAST psRNATarget
Ll_transcript_168333; FTRINITY_DN57377_c2_g1_i10 251 271 CATCAATGGACCGATGCTTCC BLAST psRNATarget
Ll_transcript_168327; FTRINITY_DN57377_c2_g1_i6 251 271 CATCAATGGACCGATGCTTCC BLAST psRNATarget
Ll_transcript_168348; FTRINITY_DN57377_c2_g1_i15 251 271 CATCAATGGACCGATGCTTCC BLAST psRNATarget
Ll_transcript_217688; FTRINITY_DN56348_c3_g1_i1 69 89 TGTCTGTGGACCTCTGCCTCC BLAST psRNATarget
Ll_transcript_95635; FTRINITY_DN49465_c0_g1_i3 156 176 CTTCCATGAACCATTGCCTCT BLAST psRNATarget
Ll_transcript_295873; TRINITY_DN51721_c1_g1_i10 234 254 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_295882; TRINITY_DN51721_c1_g1_i18 234 254 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_295865; TRINITY_DN51721_c1_g1_i3 614 634 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_295881; TRINITY_DN51721_c1_g1_i17 234 254 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_295866; TRINITY_DN51721_c1_g1_i4 234 254 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_295875; TRINITY_DN51721_c1_g1_i11 234 254 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_295880; TRINITY_DN51721_c1_g1_i16 234 254 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_295868; TRINITY_DN51721_c1_g1_i6 234 254 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_295863; TRINITY_DN51721_c1_g1_i1 234 254 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_295879; TRINITY_DN51721_c1_g1_i15 234 254 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_295877; TRINITY_DN51721_c1_g1_i13 234 254 GATCGATGAACTGTTGTTTTT BLAST psRNATarget
Ll_transcript_448728; TRINITY_DN33317_c0_g1_i1 195 215 ACTCGGAGAGCTGCTGCTTCC BLAST psRNATarget
Ll_transcript_299862; TRINITY_DN51548_c1_g2_i1 2405 2425 TTTCCATGAACTGCTTCCTCC BLAST psRNATarget
Ll_transcript_299864; TRINITY_DN51548_c1_g2_i2 2479 2499 TTTCCATGAACTGCTTCCTCC BLAST psRNATarget
Ll_transcript_345042; TRINITY_DN50463_c0_g1_i17 1740 1760 CTTCAATGAATTGCTGCTTTC BLAST psRNATarget
Ll_transcript_345027; TRINITY_DN50463_c0_g1_i5 1813 1833 CTTCAATGAATTGCTGCTTTC BLAST psRNATarget
Ll_transcript_396017; TRINITY_DN58057_c0_g1_i1 187 207 GGTCGAGGGACTGCTGCCCCC BLAST psRNATarget
Ll_transcript_385666; TRINITY_DN47292_c1_g6_i1 850 870 GGTCAATGGACTGCTGTTTCT BLAST psRNATarget
Ll_transcript_471833; TRINITY_DN52007_c2_g3_i11 208 228 CATCAATGGACCGATGCTTCC BLAST psRNATarget
Ll_transcript_471818; TRINITY_DN52007_c2_g3_i4 208 228 CATCAATGGACCGATGCTTCC BLAST psRNATarget
Ll_transcript_428502; TRINITY_DN42024_c0_g1_i1 920 940 CGTCGATGAGCCTCAGCCTCC BLAST psRNATarget
Ll_transcript_471804; TRINITY_DN52007_c2_g3_i2 208 228 CATCAATGGACCGATGCTTCC BLAST psRNATarget
Ll_transcript_471834; TRINITY_DN52007_c2_g3_i12 208 228 CATCAATGGACCGATGCTTCC BLAST psRNATarget
Ll_transcript_471825; TRINITY_DN52007_c2_g3_i8 208 228 CATCAATGGACCGATGCTTCC BLAST psRNATarget

Expression of miRNA 183


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)