miRNA 188 details

Id Micro188
SequenceGGGTCGAACTGAGAACACATG 
Annotated namesata-miR398f-5p; 
Annotated pre-miRNANone

Targets of miRNA 188

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_44478; FTRINITY_DN54194_c0_g4_i5 4004 4024 CATGTGTTCTCAGTACGACCC BLAST psRNATarget
Ll_transcript_44490; FTRINITY_DN54194_c0_g4_i9 4341 4361 CATGTGTTCTCAGTACGACCC BLAST psRNATarget
Ll_transcript_44484; FTRINITY_DN54194_c0_g4_i7 4425 4445 CATGTGTTCTCAGTACGACCC BLAST psRNATarget
Ll_transcript_166962; FTRINITY_DN57322_c0_g3_i3 3504 3524 AAGGTGTTCTCAGTTCGGCCC BLAST psRNATarget
Ll_transcript_17922; FTRINITY_DN54517_c1_g2_i2 459 479 TTTGTGTTCTTGGTTCGGTTC BLAST psRNATarget
Ll_transcript_17910; FTRINITY_DN54517_c1_g2_i1 459 479 TTTGTGTTCTTGGTTCGGTTC BLAST psRNATarget
Ll_transcript_40788; FTRINITY_DN46769_c0_g1_i1 145 165 CATGTGTTCTCAGGTCGCCCC BLAST psRNATarget
Ll_transcript_44480; FTRINITY_DN54194_c0_g2_i4 660 680 CATGTGTTCTCCGTACGACCC BLAST psRNATarget
Ll_transcript_40789; FTRINITY_DN46769_c0_g1_i2 145 165 CATGTGTTCTCAGGTCGCCCC BLAST psRNATarget
Ll_transcript_160357; FTRINITY_DN85477_c0_g1_i1 140 161 CATGTGGTTTTCGGTTCGACCC BLAST psRNATarget
Ll_transcript_141957; FTRINITY_DN54051_c3_g1_i5 241 261 GATATGTTTTCGGTTCGACTT BLAST psRNATarget
Ll_transcript_141946; FTRINITY_DN54051_c3_g1_i1 388 408 GATATGTTTTCGGTTCGACTT BLAST psRNATarget
Ll_transcript_141947; FTRINITY_DN54051_c3_g1_i2 388 408 GATATGTTTTCGGTTCGACTT BLAST psRNATarget
Ll_transcript_220788; FTRINITY_DN52008_c0_g1_i2 102 122 TTAGTGTTCTCAGTTAGGCCC BLAST psRNATarget
Ll_transcript_200098; FTRINITY_DN56491_c1_g1_i4 76 96 TTTGTGTTTTCATTTCGATTC BLAST psRNATarget
Ll_transcript_200100; FTRINITY_DN56491_c1_g1_i5 76 96 TTTGTGTTTTCATTTCGATTC BLAST psRNATarget
Ll_transcript_247140; FTRINITY_DN53399_c2_g1_i2 264 284 TTTGTGTTTTCAGTTCTACTT BLAST psRNATarget
Ll_transcript_247138; FTRINITY_DN53399_c2_g1_i1 1122 1142 TTTGTGTTTTCAGTTCTACTT BLAST psRNATarget
Ll_transcript_247141; FTRINITY_DN53399_c2_g1_i3 2160 2180 TTTGTGTTTTCAGTTCTACTT BLAST psRNATarget
Ll_transcript_54254; FTRINITY_DN57218_c4_g1_i4 1860 1880 TTTGGGTTTTCAGTTCGACTA BLAST psRNATarget
Ll_transcript_212435; FTRINITY_DN58399_c6_g1_i2 1566 1586 CGTGTGTTTCCAGTTTGACCG BLAST psRNATarget
Ll_transcript_158158; FTRINITY_DN54770_c5_g3_i3 276 296 CATGTCTTTTCAGTTCTACCT BLAST psRNATarget
Ll_transcript_109153; FTRINITY_DN51413_c0_g1_i1 591 611 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_109161; FTRINITY_DN51413_c0_g1_i8 591 611 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_109165; FTRINITY_DN51413_c0_g1_i10 591 611 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_109160; FTRINITY_DN51413_c0_g1_i7 591 611 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_109155; FTRINITY_DN51413_c0_g1_i3 591 611 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_109158; FTRINITY_DN51413_c0_g1_i5 591 611 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_109154; FTRINITY_DN51413_c0_g1_i2 591 611 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_109159; FTRINITY_DN51413_c0_g1_i6 591 611 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_109157; FTRINITY_DN51413_c0_g1_i4 591 611 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_256041; FTRINITY_DN59194_c1_g2_i1 105 125 TGTGTGTTTTCAGTTTGCTTC BLAST psRNATarget
Ll_transcript_254125; FTRINITY_DN59137_c1_g1_i6 144 164 TATTTGTTGTCAGTTCGACTT BLAST psRNATarget
Ll_transcript_254133; FTRINITY_DN59137_c1_g1_i12 144 164 TATTTGTTGTCAGTTCGACTT BLAST psRNATarget
Ll_transcript_254130; FTRINITY_DN59137_c1_g1_i9 144 164 TATTTGTTGTCAGTTCGACTT BLAST psRNATarget
Ll_transcript_254131; FTRINITY_DN59137_c1_g1_i10 144 164 TATTTGTTGTCAGTTCGACTT BLAST psRNATarget
Ll_transcript_57992; FTRINITY_DN57811_c0_g1_i4 5 25 AAAGTGTTCTTGGTTTGGCCT BLAST psRNATarget
Ll_transcript_185402; FTRINITY_DN57437_c3_g1_i1 183 203 TTGGTGTTTTTGGTTTGACTC BLAST psRNATarget
Ll_transcript_183524; FTRINITY_DN57469_c2_g2_i1 272 292 TCTGTGTTTTCATTTCGATTT BLAST psRNATarget
Ll_transcript_183539; FTRINITY_DN57469_c2_g2_i7 272 292 TCTGTGTTTTCATTTCGATTT BLAST psRNATarget
Ll_transcript_183525; FTRINITY_DN57469_c2_g2_i2 272 292 TCTGTGTTTTCATTTCGATTT BLAST psRNATarget
Ll_transcript_422598; TRINITY_DN47985_c1_g2_i1 2261 2281 CATGTGTTCTCAGTACGACCC BLAST psRNATarget
Ll_transcript_422607; TRINITY_DN47985_c1_g2_i3 2472 2492 CATGTGTTCTCAGTACGACCC BLAST psRNATarget
Ll_transcript_422602; TRINITY_DN47985_c1_g2_i2 3203 3223 CATGTGTTCTCAGTACGACCC BLAST psRNATarget
Ll_transcript_515609; TRINITY_DN50837_c1_g2_i3 223 243 AAGGTGTTCTCAGTTCGGCCC BLAST psRNATarget
Ll_transcript_515603; TRINITY_DN50837_c1_g2_i1 102 122 AAGGTGTTCTCAGTTCGGCCC BLAST psRNATarget
Ll_transcript_515611; TRINITY_DN50837_c1_g2_i5 223 243 AAGGTGTTCTCAGTTCGGCCC BLAST psRNATarget
Ll_transcript_439390; TRINITY_DN48396_c0_g2_i2 433 453 TTTGTGTTCTTGGTTCGGTTC BLAST psRNATarget
Ll_transcript_422605; TRINITY_DN47985_c1_g3_i4 127 147 CATGTGTTCTCAGGTCGCCCC BLAST psRNATarget
Ll_transcript_322986; TRINITY_DN38895_c0_g1_i1 145 165 CATGTGTTCTCAGGTCGCCCC BLAST psRNATarget
Ll_transcript_422599; TRINITY_DN47985_c1_g3_i1 127 147 CATGTGTTCTCAGGTCGCCCC BLAST psRNATarget
Ll_transcript_322987; TRINITY_DN38895_c0_g1_i2 145 165 CATGTGTTCTCAGGTCGCCCC BLAST psRNATarget
Ll_transcript_322044; TRINITY_DN60965_c0_g1_i1 18 39 CATGTGGTTTTCGGTTCGACCC BLAST psRNATarget
Ll_transcript_465225; TRINITY_DN52676_c2_g6_i1 234 254 GATATGTTTTCGGTTCGACTT BLAST psRNATarget
Ll_transcript_503452; TRINITY_DN42182_c0_g1_i1 107 127 TTAGTGTTCTCAGTTAGGCCC BLAST psRNATarget
Ll_transcript_503453; TRINITY_DN42182_c0_g1_i2 107 127 TTAGTGTTCTCAGTTAGGCCC BLAST psRNATarget
Ll_transcript_465076; TRINITY_DN52695_c4_g1_i3 229 249 TTTGTGTTTTCATTTCGATTC BLAST psRNATarget
Ll_transcript_441542; TRINITY_DN47800_c0_g2_i2 486 506 TTTGTGTTTTCAGTTCTACTT BLAST psRNATarget
Ll_transcript_441545; TRINITY_DN47800_c0_g2_i3 626 646 TTTGTGTTTTCAGTTCTACTT BLAST psRNATarget
Ll_transcript_422606; TRINITY_DN47985_c1_g5_i1 242 262 CATGTGTTCTCAGTAGGACCT BLAST psRNATarget
Ll_transcript_335420; TRINITY_DN44747_c0_g1_i3 1140 1160 CATGTCTTTTCAGTTCTACCT BLAST psRNATarget
Ll_transcript_335429; TRINITY_DN44747_c0_g1_i11 1254 1274 CATGTCTTTTCAGTTCTACCT BLAST psRNATarget
Ll_transcript_317026; TRINITY_DN44842_c0_g1_i2 392 412 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_335424; TRINITY_DN44747_c0_g1_i7 1403 1423 CATGTCTTTTCAGTTCTACCT BLAST psRNATarget
Ll_transcript_317029; TRINITY_DN44842_c0_g1_i5 392 412 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_335416; TRINITY_DN44747_c0_g1_i1 1517 1537 CATGTCTTTTCAGTTCTACCT BLAST psRNATarget
Ll_transcript_317025; TRINITY_DN44842_c0_g1_i1 392 412 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_317032; TRINITY_DN44842_c0_g1_i8 392 412 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_335425; TRINITY_DN44747_c0_g1_i8 1785 1805 CATGTCTTTTCAGTTCTACCT BLAST psRNATarget
Ll_transcript_317030; TRINITY_DN44842_c0_g1_i6 392 412 CGTGTGTTCTCAGTTTCGTCT BLAST psRNATarget
Ll_transcript_308491; TRINITY_DN40656_c0_g1_i1 106 126 CATCGGTTCTCAGTTCGACGC BLAST psRNATarget
Ll_transcript_308492; TRINITY_DN40656_c0_g1_i2 276 296 CATCGGTTCTCAGTTCGACGC BLAST psRNATarget
Ll_transcript_452102; TRINITY_DN40791_c0_g2_i2 148 168 TGTGTGTTTTCAGTTTGCTTC BLAST psRNATarget
Ll_transcript_505697; TRINITY_DN52564_c2_g2_i11 1378 1398 TATTTGTTGTCAGTTCGACTT BLAST psRNATarget
Ll_transcript_505680; TRINITY_DN52564_c2_g2_i1 1384 1404 TATTTGTTGTCAGTTCGACTT BLAST psRNATarget
Ll_transcript_505687; TRINITY_DN52564_c2_g2_i5 1278 1298 TATTTGTTGTCAGTTCGACTT BLAST psRNATarget
Ll_transcript_505683; TRINITY_DN52564_c2_g2_i3 1305 1325 TATTTGTTGTCAGTTCGACTT BLAST psRNATarget
Ll_transcript_505693; TRINITY_DN52564_c2_g2_i8 1495 1515 TATTTGTTGTCAGTTCGACTT BLAST psRNATarget
Ll_transcript_337222; TRINITY_DN48577_c1_g4_i2 5 25 AAAGTGTTCTTGGTTTGGCCT BLAST psRNATarget
Ll_transcript_337230; TRINITY_DN48577_c1_g4_i3 5 25 AAAGTGTTCTTGGTTTGGCCT BLAST psRNATarget
Ll_transcript_337214; TRINITY_DN48577_c1_g4_i1 5 25 AAAGTGTTCTTGGTTTGGCCT BLAST psRNATarget
Ll_transcript_444438; TRINITY_DN53527_c0_g1_i1 118 138 TTAGTGTTTTTGGTTTGACTC BLAST psRNATarget
Ll_transcript_376663; TRINITY_DN47716_c1_g1_i1 189 209 TTGGTGTTTTTGGTTTGACTC BLAST psRNATarget
Ll_transcript_327236; TRINITY_DN48072_c2_g2_i1 254 274 TCTGTGTTTTCATTTCGATTT BLAST psRNATarget

Expression of miRNA 188


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)