miRNA 190 details

Id Micro190
SequenceGGTGTTCTCAGGTCGCCCCTG 
Annotated nameslus-miR398f; 
Annotated pre-miRNANone

Targets of miRNA 190

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_44480; FTRINITY_DN54194_c0_g2_i4 602 622 CAGGGGCGACCTGAGAACACA BLAST psRNATarget
Ll_transcript_44478; FTRINITY_DN54194_c0_g4_i5 3946 3966 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_44490; FTRINITY_DN54194_c0_g4_i9 4283 4303 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_44484; FTRINITY_DN54194_c0_g4_i7 4367 4387 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_59476; FTRINITY_DN56226_c0_g3_i2 769 789 CATGGGCGACTTGAGAACACT BLAST psRNATarget
Ll_transcript_59484; FTRINITY_DN56226_c0_g3_i3 1094 1114 CATGGGCGACTTGAGAACACT BLAST psRNATarget
Ll_transcript_59477; FTRINITY_DN56226_c0_g4_i1 552 573 CAGTGGGCGACTTGAGAACACC BLAST psRNATarget
Ll_transcript_81763; FTRINITY_DN49840_c1_g1_i5 605 625 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_81769; FTRINITY_DN49840_c1_g1_i11 713 733 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_81759; FTRINITY_DN49840_c1_g1_i1 723 743 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_81764; FTRINITY_DN49840_c1_g1_i6 766 786 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_81768; FTRINITY_DN49840_c1_g1_i10 788 808 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_81762; FTRINITY_DN49840_c1_g1_i4 1132 1152 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_81766; FTRINITY_DN49840_c1_g1_i8 1142 1162 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_81761; FTRINITY_DN49840_c1_g1_i3 1185 1205 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_81765; FTRINITY_DN49840_c1_g1_i7 1216 1236 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_81760; FTRINITY_DN49840_c1_g1_i2 1291 1311 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_81767; FTRINITY_DN49840_c1_g1_i9 1635 1655 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_181221; FTRINITY_DN53522_c4_g5_i1 626 646 TGGGGTCGACCTTGGAATACC BLAST psRNATarget
Ll_transcript_181224; FTRINITY_DN53522_c4_g5_i2 626 646 TGGGGTCGACCTTGGAATACC BLAST psRNATarget
Ll_transcript_181230; FTRINITY_DN53522_c4_g5_i4 317 337 TGGGGTCGACCTTGGAATACC BLAST psRNATarget
Ll_transcript_181232; FTRINITY_DN53522_c4_g5_i5 709 729 TGGGGTCGACCTTGGAATACC BLAST psRNATarget
Ll_transcript_181236; FTRINITY_DN53522_c4_g5_i7 610 630 TGGGGTCGACCTTGGAATACC BLAST psRNATarget
Ll_transcript_181233; FTRINITY_DN53522_c4_g5_i6 626 646 TGGGGTCGACCTTGGAATACC BLAST psRNATarget
Ll_transcript_181240; FTRINITY_DN53522_c4_g5_i8 709 729 TGGGGTCGACCTTGGAATACC BLAST psRNATarget
Ll_transcript_202560; FTRINITY_DN56475_c2_g1_i5 583 603 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_202574; FTRINITY_DN56475_c2_g1_i15 583 603 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_202563; FTRINITY_DN56475_c2_g1_i8 583 603 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_202588; FTRINITY_DN56475_c2_g1_i29 583 603 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_202590; FTRINITY_DN56475_c2_g1_i31 583 603 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_164470; FTRINITY_DN53200_c6_g2_i2 1214 1234 AGTGGTCGATTTGAGAACACT BLAST psRNATarget
Ll_transcript_164469; FTRINITY_DN53200_c6_g2_i1 1214 1234 AGTGGTCGATTTGAGAACACT BLAST psRNATarget
Ll_transcript_164475; FTRINITY_DN53200_c6_g2_i3 1326 1346 AGTGGTCGATTTGAGAACACT BLAST psRNATarget
Ll_transcript_164477; FTRINITY_DN53200_c6_g2_i4 1326 1346 AGTGGTCGATTTGAGAACACT BLAST psRNATarget
Ll_transcript_274366; FTRINITY_DN54247_c7_g3_i1 1096 1116 TTGGGGCCATCTGAGATCACT BLAST psRNATarget
Ll_transcript_205347; FTRINITY_DN56970_c0_g3_i1 15 35 AAGTGCCAACTTGAGAACACC BLAST psRNATarget
Ll_transcript_205348; FTRINITY_DN56970_c0_g3_i2 15 35 AAGTGCCAACTTGAGAACACC BLAST psRNATarget
Ll_transcript_205349; FTRINITY_DN56970_c0_g3_i3 15 35 AAGTGCCAACTTGAGAACACC BLAST psRNATarget
Ll_transcript_422606; TRINITY_DN47985_c1_g5_i1 184 204 CAGGGGCGACCTGAGAACACA BLAST psRNATarget
Ll_transcript_422598; TRINITY_DN47985_c1_g2_i1 2203 2223 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_422607; TRINITY_DN47985_c1_g2_i3 2414 2434 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_422602; TRINITY_DN47985_c1_g2_i2 3145 3165 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_314489; TRINITY_DN46787_c4_g4_i1 779 799 CATGGGCGACTTGAGAACACT BLAST psRNATarget
Ll_transcript_314490; TRINITY_DN46787_c4_g1_i2 904 925 CAGTGGGCGACTTGAGAACACC BLAST psRNATarget
Ll_transcript_276020; TRINITY_DN37786_c0_g1_i1 177 197 GAGGGATGGCCTGAGAGTACC BLAST psRNATarget
Ll_transcript_503581; TRINITY_DN42195_c0_g2_i4 776 796 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_503579; TRINITY_DN42195_c0_g2_i2 996 1016 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_503580; TRINITY_DN42195_c0_g2_i3 1195 1215 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_503578; TRINITY_DN42195_c0_g2_i1 1415 1435 AGTTGGTGACCTGGGAACACT BLAST psRNATarget
Ll_transcript_369190; TRINITY_DN48619_c4_g6_i1 625 645 TGGGGTCGACCTTGGAATACC BLAST psRNATarget
Ll_transcript_369201; TRINITY_DN48619_c4_g6_i3 625 645 TGGGGTCGACCTTGGAATACC BLAST psRNATarget
Ll_transcript_369195; TRINITY_DN48619_c4_g6_i2 625 645 TGGGGTCGACCTTGGAATACC BLAST psRNATarget
Ll_transcript_344278; TRINITY_DN50424_c2_g1_i20 320 340 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_344256; TRINITY_DN50424_c2_g1_i3 614 634 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_344273; TRINITY_DN50424_c2_g1_i16 614 634 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_344265; TRINITY_DN50424_c2_g1_i10 614 634 AAAGGTCGACTTGAGAACACA BLAST psRNATarget
Ll_transcript_413349; TRINITY_DN45689_c0_g1_i7 387 407 CTGGGACGGCCTGGGAATGCT BLAST psRNATarget
Ll_transcript_413353; TRINITY_DN45689_c0_g1_i10 437 457 CTGGGACGGCCTGGGAATGCT BLAST psRNATarget
Ll_transcript_469456; TRINITY_DN45423_c0_g1_i4 1216 1236 AGTGGTCGATTTGAGAACACT BLAST psRNATarget
Ll_transcript_469451; TRINITY_DN45423_c0_g1_i2 1216 1236 AGTGGTCGATTTGAGAACACT BLAST psRNATarget
Ll_transcript_469448; TRINITY_DN45423_c0_g1_i1 1328 1348 AGTGGTCGATTTGAGAACACT BLAST psRNATarget
Ll_transcript_469454; TRINITY_DN45423_c0_g1_i3 1328 1348 AGTGGTCGATTTGAGAACACT BLAST psRNATarget
Ll_transcript_533771; TRINITY_DN50026_c2_g1_i2 1145 1165 TTGGGGCCATCTGAGATCACT BLAST psRNATarget
Ll_transcript_533773; TRINITY_DN50026_c2_g1_i4 1145 1165 TTGGGGCCATCTGAGATCACT BLAST psRNATarget
Ll_transcript_393163; TRINITY_DN45952_c0_g3_i1 16 36 AAGTGCCAACTTGAGAACACC BLAST psRNATarget
Ll_transcript_393164; TRINITY_DN45952_c0_g3_i2 16 36 AAGTGCCAACTTGAGAACACC BLAST psRNATarget

Expression of miRNA 190


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)