Transcript | Ll_transcript_21371 |
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CDS coordinates | 2165-5188 (+) |
Peptide sequence | MLQMLLSQNNTKKVIGIASLRHGLFVISPVQRDHSCNNVSQSCNSGSSSSDFNLWHLRFGHAPLFSMKSLSSQFDCIPPCNNKHVPCDVCHASRQKRLPFCDSNTQSNKVFQLLHVDIWGPYSTTSILGHNYFLTLVDDFTRFTWVIMMKTKSETRQHIISFVALIENQFSVKLQTIRSDNDPEFLMNDFFSNKGIIHQRSCVGTPQQNGVVERKHQHILNVARAVFLQAHLPTNFWNFAIQHAVHIINRLPSPLLHNSSPYQLLHGSLPSLESLRVFGCLAYASTLAAGRGKFDPRARKCMFLGYKEGTKGYILYDLAAHNFFMSRDVVFYEHFFPLCPSKSQPPSHESNTPLVSSHSPLESYTLLPESNTTSSPESITTPLDESHTSSESYTPSQSSTSSSESSIIPSVAVPRQSTRHRRPPSHLQDYHCSLAHGSVNNTSSSPQVLYPLGSVLDYSKCSPKYKNFCLTISSIADPTTYNQAVQLTHWRQAMDSELLALNQNKTWSLVSLPPDKVPIGCKWVYKTKVYADGTLERYKARLVAKGYTQLEGVDFFDTFSPVVKITTVRTVLALAAIKSWFLEQLDVNNAFLHGDLHEEVYMTPPPGLTLDHPNQVCKLHKSLYGLKQASREWHTTLSNALISLGYSHSQADQALFTKSSSTSFTAILVYVDDMVLAGDNFDEIQQVKQFLDQTFKIKDLGQLRFFLGLEVARRKDGIHLNQRRYALALLEDSGCLAAKPAKVPFDPSLKLQLDQGEPFADILSYRRLVGRLLYLTISRPDLAYATQQLSLFMCKPMVVHYKAALQVLHYLKSSPAQGLFFSSSSALKLSAFADSDWACCLDTRKSITGFCIFLGNSLISWKSKKQNTVSRSSSEAEYRALGSLTCEVQWLNFLFSDLHVPLLNPASVYCDNRSAIYLAHNPVFHERSKHIEVDCHVVRERIQKGLIHLLPIASSDQLADAFTKPLPSSSFHSFVSKLVCVHSITQLEEGCWLDTFWFVKLILLISA* |
ORF Type | complete |
Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.51% of identity |
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Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.16% of identity |
Eggnog | - |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_017415203.1) |
Pfam | GAG-pre-integrase domain (PF13976.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |
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Alignmet by MSA Viewer