miRNA 208 details

Id Micro208
SequenceTACGAGCCACTTGAAACTGAA 
Annotated namesath-miR841a-5p; 
Annotated pre-miRNANone

Targets of miRNA 208

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_219660; FTRINITY_DN56342_c4_g1_i1 413 433 TGCTGTTTCAAGTGGTTTGTA BLAST psRNATarget
Ll_transcript_134649; FTRINITY_DN58085_c0_g5_i5 1385 1405 GCCAGTTTCAAGTGGCTCATC BLAST psRNATarget
Ll_transcript_134643; FTRINITY_DN58085_c0_g5_i3 1501 1521 GCCAGTTTCAAGTGGCTCATC BLAST psRNATarget
Ll_transcript_134628; FTRINITY_DN58085_c0_g5_i1 1954 1974 GCCAGTTTCAAGTGGCTCATC BLAST psRNATarget
Ll_transcript_134652; FTRINITY_DN58085_c0_g5_i6 2024 2044 GCCAGTTTCAAGTGGCTCATC BLAST psRNATarget
Ll_transcript_244548; FTRINITY_DN53328_c7_g1_i5 714 734 TTCAGTTTCCAGTGGGTCGTA BLAST psRNATarget
Ll_transcript_244546; FTRINITY_DN53328_c7_g1_i3 271 291 TTCAGTTTCCAGTGGGTCGTA BLAST psRNATarget
Ll_transcript_244549; FTRINITY_DN53328_c7_g1_i6 271 291 TTCAGTTTCCAGTGGGTCGTA BLAST psRNATarget
Ll_transcript_40264; FTRINITY_DN47175_c0_g1_i1 1424 1444 AGCAGTTTCTAGTGGCTAGTA BLAST psRNATarget
Ll_transcript_142832; FTRINITY_DN54076_c0_g6_i1 239 259 TCTAGGTTCAGGTGGTTTGTA BLAST psRNATarget
Ll_transcript_92201; FTRINITY_DN54833_c1_g2_i10 2239 2259 TACAGTTGCACGTGGTTCGTA BLAST psRNATarget
Ll_transcript_92193; FTRINITY_DN54833_c1_g2_i6 2356 2376 TACAGTTGCACGTGGTTCGTA BLAST psRNATarget
Ll_transcript_205996; FTRINITY_DN51191_c0_g1_i1 605 625 TTCAATTTTCAGTGGCTTGTA BLAST psRNATarget
Ll_transcript_205997; FTRINITY_DN51191_c0_g1_i2 628 648 TTCAATTTTCAGTGGCTTGTA BLAST psRNATarget
Ll_transcript_187361; FTRINITY_DN51879_c0_g2_i2 906 926 TTCAGGTTCAAGGGGTTCGTG BLAST psRNATarget
Ll_transcript_218848; FTRINITY_DN56335_c0_g4_i4 829 849 ATCAGTTTCCAGTGGTTTGTT BLAST psRNATarget
Ll_transcript_270080; FTRINITY_DN71894_c0_g1_i1 145 165 ATCAATTTTAGGTGGTTCGTC BLAST psRNATarget
Ll_transcript_134623; FTRINITY_DN58085_c0_g2_i2 1858 1878 GTCAATTTCAAGTGGCTCTTC BLAST psRNATarget
Ll_transcript_134644; FTRINITY_DN58085_c0_g2_i11 1941 1961 GTCAATTTCAAGTGGCTCTTC BLAST psRNATarget
Ll_transcript_134634; FTRINITY_DN58085_c0_g2_i9 1975 1995 GTCAATTTCAAGTGGCTCTTC BLAST psRNATarget
Ll_transcript_134633; FTRINITY_DN58085_c0_g2_i8 2058 2078 GTCAATTTCAAGTGGCTCTTC BLAST psRNATarget
Ll_transcript_134627; FTRINITY_DN58085_c0_g2_i6 2064 2084 GTCAATTTCAAGTGGCTCTTC BLAST psRNATarget
Ll_transcript_134617; FTRINITY_DN58085_c0_g2_i1 2148 2168 GTCAATTTCAAGTGGCTCTTC BLAST psRNATarget
Ll_transcript_134637; FTRINITY_DN58085_c0_g2_i10 2271 2291 GTCAATTTCAAGTGGCTCTTC BLAST psRNATarget
Ll_transcript_65883; FTRINITY_DN5166_c0_g1_i1 167 187 ATTTGTTTCAAGTGGCTTTTA BLAST psRNATarget
Ll_transcript_225700; FTRINITY_DN56118_c0_g1_i1 478 498 CATGGTTTCAGGTGGTTTGTT BLAST psRNATarget
Ll_transcript_157765; FTRINITY_DN54705_c0_g4_i3 1002 1022 GGCAGTTTAAAGTTGTTCGTA BLAST psRNATarget
Ll_transcript_246219; FTRINITY_DN53342_c2_g3_i1 39 59 AATGGTTTTAGGTGGCTCTTA BLAST psRNATarget
Ll_transcript_157771; FTRINITY_DN54705_c0_g4_i6 1065 1085 GGCAGTTTAAAGTTGTTCGTA BLAST psRNATarget
Ll_transcript_325914; TRINITY_DN48068_c0_g1_i2 346 366 TGCTGTTTCAAGTGGTTTGTA BLAST psRNATarget
Ll_transcript_521378; TRINITY_DN46582_c1_g1_i9 2031 2051 GCCAGTTTCAAGTGGCTCATC BLAST psRNATarget
Ll_transcript_314288; TRINITY_DN46998_c0_g1_i1 667 687 TTCAGTTTCCAGTGGGTCGTA BLAST psRNATarget
Ll_transcript_314289; TRINITY_DN46998_c0_g1_i2 672 692 TTCAGTTTCCAGTGGGTCGTA BLAST psRNATarget
Ll_transcript_314290; TRINITY_DN46998_c0_g1_i3 229 249 TTCAGTTTCCAGTGGGTCGTA BLAST psRNATarget
Ll_transcript_322292; TRINITY_DN35377_c0_g1_i1 1421 1441 AGCAGTTTCTAGTGGCTAGTA BLAST psRNATarget
Ll_transcript_392565; TRINITY_DN45922_c5_g2_i5 580 600 TACAGTTGCACGTGGTTCGTA BLAST psRNATarget
Ll_transcript_473021; TRINITY_DN52025_c2_g1_i3 390 410 TTCAATTTTCAGTGGCTTGTA BLAST psRNATarget
Ll_transcript_473017; TRINITY_DN52025_c2_g1_i1 623 643 TTCAATTTTCAGTGGCTTGTA BLAST psRNATarget
Ll_transcript_473020; TRINITY_DN52025_c2_g1_i2 646 666 TTCAATTTTCAGTGGCTTGTA BLAST psRNATarget
Ll_transcript_473031; TRINITY_DN52025_c2_g1_i6 746 766 TTCAATTTTCAGTGGCTTGTA BLAST psRNATarget
Ll_transcript_321425; TRINITY_DN43446_c0_g1_i4 793 813 TTCAGGTTCAAGGGGTTCGTG BLAST psRNATarget
Ll_transcript_321424; TRINITY_DN43446_c0_g1_i3 909 929 TTCAGGTTCAAGGGGTTCGTG BLAST psRNATarget
Ll_transcript_521377; TRINITY_DN46582_c1_g1_i8 1203 1223 GTCAATTTCAAGTGGCTCTTC BLAST psRNATarget
Ll_transcript_521384; TRINITY_DN46582_c1_g1_i13 1896 1916 GTCAATTTCAAGTGGCTCTTC BLAST psRNATarget
Ll_transcript_521370; TRINITY_DN46582_c1_g1_i1 1929 1949 GTCAATTTCAAGTGGCTCTTC BLAST psRNATarget
Ll_transcript_521372; TRINITY_DN46582_c1_g1_i3 2070 2090 GTCAATTTCAAGTGGCTCTTC BLAST psRNATarget
Ll_transcript_521371; TRINITY_DN46582_c1_g1_i2 2070 2090 GTCAATTTCAAGTGGCTCTTC BLAST psRNATarget
Ll_transcript_521373; TRINITY_DN46582_c1_g1_i4 2127 2147 GTCAATTTCAAGTGGCTCTTC BLAST psRNATarget
Ll_transcript_324553; TRINITY_DN76960_c0_g1_i1 146 166 ATTTGTTTCAAGTGGCTTTTA BLAST psRNATarget
Ll_transcript_301126; TRINITY_DN72926_c0_g1_i1 372 392 CATGGTTTCAGGTGGTTTGTT BLAST psRNATarget
Ll_transcript_362632; TRINITY_DN48440_c0_g4_i2 1003 1023 GGCAGTTTAAAGTTGTTCGTA BLAST psRNATarget
Ll_transcript_441088; TRINITY_DN48335_c1_g9_i3 535 555 AATGGTTTTAGGTGGCTCTTA BLAST psRNATarget

Expression of miRNA 208


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)