miRNA 213 details

Id Micro213
SequenceTATGCGTAAGACGGATTCGTA 
Annotated namesosa-miR1856; 
Annotated pre-miRNANone

Targets of miRNA 213

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_268580; FTRINITY_DN55826_c0_g1_i9 1746 1766 CTCTAATCAGTCTTACGTATA BLAST psRNATarget
Ll_transcript_268561; FTRINITY_DN55826_c0_g1_i1 1820 1840 CTCTAATCAGTCTTACGTATA BLAST psRNATarget
Ll_transcript_268570; FTRINITY_DN55826_c0_g1_i7 1872 1892 CTCTAATCAGTCTTACGTATA BLAST psRNATarget
Ll_transcript_91673; FTRINITY_DN54861_c0_g3_i1 190 210 TACGGATCTGTCTTACCTGTA BLAST psRNATarget
Ll_transcript_65413; FTRINITY_DN55337_c2_g7_i1 89 109 AATGAATCTGTTTTATGGATA BLAST psRNATarget
Ll_transcript_247026; FTRINITY_DN53395_c4_g1_i14 443 463 TAAGACTTTGTCTTATGCATA BLAST psRNATarget
Ll_transcript_162668; FTRINITY_DN53204_c1_g1_i13 526 546 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_247012; FTRINITY_DN53395_c4_g1_i1 1480 1500 TAAGACTTTGTCTTATGCATA BLAST psRNATarget
Ll_transcript_247023; FTRINITY_DN53395_c4_g1_i11 1780 1800 TAAGACTTTGTCTTATGCATA BLAST psRNATarget
Ll_transcript_247028; FTRINITY_DN53395_c4_g1_i16 1937 1957 TAAGACTTTGTCTTATGCATA BLAST psRNATarget
Ll_transcript_162649; FTRINITY_DN53204_c1_g1_i6 2114 2134 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_162665; FTRINITY_DN53204_c1_g1_i12 2117 2137 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_162652; FTRINITY_DN53204_c1_g1_i8 2190 2210 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_162632; FTRINITY_DN53204_c1_g1_i1 2231 2251 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_162671; FTRINITY_DN53204_c1_g1_i14 2555 2575 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_104157; FTRINITY_DN48688_c0_g1_i1 23 43 ATTGAATTCGTTTTACGTGTT BLAST psRNATarget
Ll_transcript_234133; FTRINITY_DN52873_c1_g1_i3 436 456 TTTGAATTCATCTTATGTATA BLAST psRNATarget
Ll_transcript_230614; FTRINITY_DN52362_c0_g2_i5 1018 1038 TTCGAATCTGTTGTATGCATG BLAST psRNATarget
Ll_transcript_230612; FTRINITY_DN52362_c0_g2_i4 1577 1597 TTCGAATCTGTTGTATGCATG BLAST psRNATarget
Ll_transcript_218162; FTRINITY_DN56374_c1_g4_i1 1567 1587 ACTGAGTTTGTCTTATGCATT BLAST psRNATarget
Ll_transcript_218170; FTRINITY_DN56374_c1_g4_i2 1567 1587 ACTGAGTTTGTCTTATGCATT BLAST psRNATarget
Ll_transcript_218179; FTRINITY_DN56374_c1_g4_i4 1668 1688 ACTGAGTTTGTCTTATGCATT BLAST psRNATarget
Ll_transcript_182372; FTRINITY_DN53544_c1_g2_i1 3493 3513 ATCGAATCTGTCTGACGAATA BLAST psRNATarget
Ll_transcript_182373; FTRINITY_DN53544_c1_g2_i2 4266 4286 ATCGAATCTGTCTGACGAATA BLAST psRNATarget
Ll_transcript_30499; FTRINITY_DN58405_c2_g1_i5 391 411 ATTGATTCTGTTTTATGCATG BLAST psRNATarget
Ll_transcript_16812; FTRINITY_DN54591_c0_g1_i1 643 663 GTCAGATCTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_332454; TRINITY_DN75987_c0_g1_i1 237 257 GGAGGATCCGTTTTGCGCATG BLAST psRNATarget
Ll_transcript_420140; TRINITY_DN48761_c0_g1_i5 1656 1676 CTCTAATCAGTCTTACGTATA BLAST psRNATarget
Ll_transcript_443256; TRINITY_DN47853_c1_g1_i3 1032 1052 TACGGATCTGTCTTACCTGTA BLAST psRNATarget
Ll_transcript_443284; TRINITY_DN47853_c1_g1_i12 1228 1248 TACGGATCTGTCTTACCTGTA BLAST psRNATarget
Ll_transcript_369014; TRINITY_DN48691_c0_g1_i13 2103 2123 AATGAATCTGTTTTATGGATA BLAST psRNATarget
Ll_transcript_369012; TRINITY_DN48691_c0_g1_i11 2172 2192 AATGAATCTGTTTTATGGATA BLAST psRNATarget
Ll_transcript_369004; TRINITY_DN48691_c0_g1_i3 2211 2231 AATGAATCTGTTTTATGGATA BLAST psRNATarget
Ll_transcript_315239; TRINITY_DN46746_c0_g1_i2 678 698 TAAGACTTTGTCTTATGCATA BLAST psRNATarget
Ll_transcript_315237; TRINITY_DN46746_c0_g1_i1 873 893 TAAGACTTTGTCTTATGCATA BLAST psRNATarget
Ll_transcript_315240; TRINITY_DN46746_c0_g1_i3 897 917 TAAGACTTTGTCTTATGCATA BLAST psRNATarget
Ll_transcript_309218; TRINITY_DN47149_c3_g1_i3 1376 1396 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_309219; TRINITY_DN47149_c3_g1_i4 1525 1545 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_309225; TRINITY_DN47149_c3_g1_i9 1619 1639 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_309222; TRINITY_DN47149_c3_g1_i7 1631 1651 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_309217; TRINITY_DN47149_c3_g1_i2 1682 1702 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_309224; TRINITY_DN47149_c3_g1_i8 1842 1862 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_309221; TRINITY_DN47149_c3_g1_i6 2109 2129 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_309216; TRINITY_DN47149_c3_g1_i1 2121 2141 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_309220; TRINITY_DN47149_c3_g1_i5 2332 2352 TGTGAAACTGTTTTGTGCATA BLAST psRNATarget
Ll_transcript_467767; TRINITY_DN49219_c2_g8_i1 32 52 GGTGAATCTGTCCTGCGCGTA BLAST psRNATarget
Ll_transcript_295452; TRINITY_DN51724_c2_g5_i3 296 316 ACTGAGTTTGTCTTATGCATT BLAST psRNATarget
Ll_transcript_371835; TRINITY_DN47005_c4_g3_i3 347 367 TTTGAATTCATCTTATGTATA BLAST psRNATarget
Ll_transcript_361844; TRINITY_DN48476_c2_g3_i4 954 974 TTCGAATCTGTTGTATGCATG BLAST psRNATarget
Ll_transcript_295458; TRINITY_DN51724_c2_g5_i4 296 316 ACTGAGTTTGTCTTATGCATT BLAST psRNATarget
Ll_transcript_295439; TRINITY_DN51724_c2_g5_i1 296 316 ACTGAGTTTGTCTTATGCATT BLAST psRNATarget
Ll_transcript_361845; TRINITY_DN48476_c2_g3_i5 1577 1597 TTCGAATCTGTTGTATGCATG BLAST psRNATarget
Ll_transcript_351772; TRINITY_DN42522_c0_g1_i1 4283 4303 ATCGAATCTGTCTGACGAATA BLAST psRNATarget
Ll_transcript_337988; TRINITY_DN48581_c3_g1_i1 397 417 TTTGATTTTGTCTTACGTGTA BLAST psRNATarget

Expression of miRNA 213


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)