miRNA 216 details

Id Micro216
SequenceTATGTTCTCAGGTCGCCCCTG 
Annotated namesstu-miR398a-3p; 
Annotated pre-miRNANone

Targets of miRNA 216

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_44480; FTRINITY_DN54194_c0_g2_i4 602 622 CAGGGGCGACCTGAGAACACA BLAST psRNATarget
Ll_transcript_44478; FTRINITY_DN54194_c0_g4_i5 3946 3966 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_44490; FTRINITY_DN54194_c0_g4_i9 4283 4303 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_44484; FTRINITY_DN54194_c0_g4_i7 4367 4387 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_51114; FTRINITY_DN58856_c0_g4_i1 567 587 TGGGAGAGACCTGAGGACATG BLAST psRNATarget
Ll_transcript_210789; FTRINITY_DN58335_c3_g3_i3 86 106 TGGGAGAGACCTGAGGACATG BLAST psRNATarget
Ll_transcript_210791; FTRINITY_DN58335_c3_g4_i1 49 69 TGGGAGAGACCTGAGGACATG BLAST psRNATarget
Ll_transcript_210800; FTRINITY_DN58335_c3_g3_i5 86 106 TGGGAGAGACCTGAGGACATG BLAST psRNATarget
Ll_transcript_93340; FTRINITY_DN54881_c1_g11_i2 1248 1268 ATGGGGAGATCTGAGAAGATA BLAST psRNATarget
Ll_transcript_249103; FTRINITY_DN55958_c1_g4_i3 1015 1035 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_249093; FTRINITY_DN55958_c1_g4_i1 1647 1667 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_249105; FTRINITY_DN55958_c1_g4_i4 1766 1786 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_249100; FTRINITY_DN55958_c1_g4_i2 2078 2098 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_34960; FTRINITY_DN58733_c0_g1_i4 1412 1432 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_34959; FTRINITY_DN58733_c0_g1_i3 1492 1512 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_34970; FTRINITY_DN58733_c0_g1_i8 1492 1512 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_34989; FTRINITY_DN58733_c0_g1_i18 1540 1560 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_34975; FTRINITY_DN58733_c0_g1_i12 1559 1579 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_34971; FTRINITY_DN58733_c0_g1_i9 1620 1640 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_34976; FTRINITY_DN58733_c0_g1_i13 1636 1656 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_34983; FTRINITY_DN58733_c0_g1_i16 1687 1707 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_34972; FTRINITY_DN58733_c0_g1_i10 1687 1707 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_34974; FTRINITY_DN58733_c0_g1_i11 1764 1784 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_233909; FTRINITY_DN52853_c0_g1_i1 424 444 AAGGTGAGAACTGAGAACATA BLAST psRNATarget
Ll_transcript_233922; FTRINITY_DN52853_c0_g1_i14 21 41 AAGGTGAGAACTGAGAACATA BLAST psRNATarget
Ll_transcript_233923; FTRINITY_DN52853_c0_g1_i15 424 444 AAGGTGAGAACTGAGAACATA BLAST psRNATarget
Ll_transcript_233917; FTRINITY_DN52853_c0_g1_i9 424 444 AAGGTGAGAACTGAGAACATA BLAST psRNATarget
Ll_transcript_203899; FTRINITY_DN56918_c1_g3_i2 535 555 TGGTGCCGATTTGAGAATATA BLAST psRNATarget
Ll_transcript_93345; FTRINITY_DN54881_c1_g11_i3 1248 1268 ATGGGGAGGTCTGAGAAGATA BLAST psRNATarget
Ll_transcript_93334; FTRINITY_DN54881_c1_g11_i1 1352 1372 ATGGGGAGGTCTGAGAAGATA BLAST psRNATarget
Ll_transcript_422606; TRINITY_DN47985_c1_g5_i1 184 204 CAGGGGCGACCTGAGAACACA BLAST psRNATarget
Ll_transcript_422598; TRINITY_DN47985_c1_g2_i1 2203 2223 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_422607; TRINITY_DN47985_c1_g2_i3 2414 2434 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_422602; TRINITY_DN47985_c1_g2_i2 3145 3165 CAGGGGCGACCTGAGAACACG BLAST psRNATarget
Ll_transcript_352946; TRINITY_DN49462_c2_g1_i2 568 588 TGGGAGAGACCTGAGGACATG BLAST psRNATarget
Ll_transcript_352958; TRINITY_DN49462_c2_g1_i4 658 678 TGGGAGAGACCTGAGGACATG BLAST psRNATarget
Ll_transcript_367713; TRINITY_DN48646_c1_g6_i1 1223 1243 ATGGGGAGATCTGAGAAGATA BLAST psRNATarget
Ll_transcript_367714; TRINITY_DN48646_c1_g6_i2 1759 1779 ATGGGGAGATCTGAGAAGATA BLAST psRNATarget
Ll_transcript_360610; TRINITY_DN47644_c4_g6_i1 1601 1621 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_360618; TRINITY_DN47644_c4_g6_i3 1721 1741 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_360615; TRINITY_DN47644_c4_g6_i2 2073 2093 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_360626; TRINITY_DN47644_c4_g6_i6 2369 2389 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_360620; TRINITY_DN47644_c4_g6_i4 2489 2509 AAGGGGTGGCCTGAGAAGGTG BLAST psRNATarget
Ll_transcript_441909; TRINITY_DN47859_c0_g1_i10 1436 1456 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_441913; TRINITY_DN47859_c0_g1_i14 1436 1456 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_441912; TRINITY_DN47859_c0_g1_i13 1564 1584 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_441899; TRINITY_DN47859_c0_g1_i3 1568 1588 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_441906; TRINITY_DN47859_c0_g1_i7 1564 1584 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_441908; TRINITY_DN47859_c0_g1_i9 1568 1588 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_441911; TRINITY_DN47859_c0_g1_i12 1696 1716 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_441900; TRINITY_DN47859_c0_g1_i4 1564 1584 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_441910; TRINITY_DN47859_c0_g1_i11 1696 1716 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_441907; TRINITY_DN47859_c0_g1_i8 1696 1716 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_441905; TRINITY_DN47859_c0_g1_i6 1696 1716 AAGAGGCGACTTGGGAAGATA BLAST psRNATarget
Ll_transcript_287540; TRINITY_DN51301_c0_g1_i4 768 788 TGGTGCCGATTTGAGAATATA BLAST psRNATarget
Ll_transcript_367718; TRINITY_DN48646_c1_g6_i4 743 763 ATGGGGAGGTCTGAGAAGATA BLAST psRNATarget
Ll_transcript_367717; TRINITY_DN48646_c1_g6_i3 1223 1243 ATGGGGAGGTCTGAGAAGATA BLAST psRNATarget

Expression of miRNA 216


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)