miRNA 220 details

Id Micro220
SequenceTCAGGAGAGATGACACCGACG 
Annotated namesata-miR1432-5p; 
Annotated pre-miRNANone

Targets of miRNA 220

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_104167; FTRINITY_DN48624_c0_g1_i1 2327 2347 TTTCGGGGTCATCTTTCTTGA BLAST psRNATarget
Ll_transcript_207670; FTRINITY_DN52685_c0_g1_i4 354 374 TGTTGTTGTCGTCTCTTCTGA BLAST psRNATarget
Ll_transcript_67625; FTRINITY_DN55035_c2_g1_i1 167 187 CCTCGGTGTCATTTCTATTGA BLAST psRNATarget
Ll_transcript_67626; FTRINITY_DN55035_c2_g1_i2 167 187 CCTCGGTGTCATTTCTATTGA BLAST psRNATarget
Ll_transcript_33762; FTRINITY_DN58756_c3_g6_i1 3440 3460 GATCTGTGTCTTCTCTCCTGA BLAST psRNATarget
Ll_transcript_78443; FTRINITY_DN58120_c0_g1_i9 2039 2059 CATTGGCATCATCTCTCCTGA BLAST psRNATarget
Ll_transcript_78433; FTRINITY_DN58120_c0_g1_i2 3153 3173 CATTGGCATCATCTCTCCTGA BLAST psRNATarget
Ll_transcript_78435; FTRINITY_DN58120_c0_g1_i4 3282 3302 CATTGGCATCATCTCTCCTGA BLAST psRNATarget
Ll_transcript_141984; FTRINITY_DN54034_c4_g1_i1 103 123 TGTTGGTGTTGTTTCTCCTGT BLAST psRNATarget
Ll_transcript_96386; FTRINITY_DN90817_c0_g1_i1 210 230 TGTTGTTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_164444; FTRINITY_DN53200_c2_g1_i2 796 816 GGTTGTTGTCATTTCTTTTGA BLAST psRNATarget
Ll_transcript_212635; FTRINITY_DN58382_c2_g2_i8 1577 1597 CATTGGTGTTATTTCTTCTGT BLAST psRNATarget
Ll_transcript_212636; FTRINITY_DN58382_c2_g2_i9 4170 4190 CATTGGTGTTATTTCTTCTGT BLAST psRNATarget
Ll_transcript_212642; FTRINITY_DN58382_c2_g2_i14 4183 4203 CATTGGTGTTATTTCTTCTGT BLAST psRNATarget
Ll_transcript_212639; FTRINITY_DN58382_c2_g2_i12 4264 4284 CATTGGTGTTATTTCTTCTGT BLAST psRNATarget
Ll_transcript_212638; FTRINITY_DN58382_c2_g2_i11 4277 4297 CATTGGTGTTATTTCTTCTGT BLAST psRNATarget
Ll_transcript_212609; FTRINITY_DN58382_c2_g2_i2 4367 4387 CATTGGTGTTATTTCTTCTGT BLAST psRNATarget
Ll_transcript_212631; FTRINITY_DN58382_c2_g2_i7 4380 4400 CATTGGTGTTATTTCTTCTGT BLAST psRNATarget
Ll_transcript_212605; FTRINITY_DN58382_c2_g2_i1 4474 4494 CATTGGTGTTATTTCTTCTGT BLAST psRNATarget
Ll_transcript_106592; FTRINITY_DN52935_c0_g1_i5 145 165 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_106584; FTRINITY_DN52935_c0_g1_i2 145 165 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_106608; FTRINITY_DN52935_c0_g1_i11 145 165 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_106611; FTRINITY_DN52935_c0_g1_i12 145 165 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_108551; FTRINITY_DN50775_c0_g1_i1 1140 1160 CCTCGGTGTTATCTTTCTGGA BLAST psRNATarget
Ll_transcript_108556; FTRINITY_DN50775_c0_g1_i5 1786 1806 CCTCGGTGTTATCTTTCTGGA BLAST psRNATarget
Ll_transcript_204246; FTRINITY_DN56968_c1_g1_i4 1192 1212 AGTTGGTGTCATTTCTCCTAT BLAST psRNATarget
Ll_transcript_204245; FTRINITY_DN56968_c1_g1_i3 1365 1385 AGTTGGTGTCATTTCTCCTAT BLAST psRNATarget
Ll_transcript_204244; FTRINITY_DN56968_c1_g1_i2 1342 1362 AGTTGGTGTCATTTCTCCTAT BLAST psRNATarget
Ll_transcript_204243; FTRINITY_DN56968_c1_g1_i1 1963 1983 AGTTGGTGTCATTTCTCCTAT BLAST psRNATarget
Ll_transcript_204249; FTRINITY_DN56968_c1_g1_i6 2086 2106 AGTTGGTGTCATTTCTCCTAT BLAST psRNATarget
Ll_transcript_32158; FTRINITY_DN58465_c1_g1_i18 610 630 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32160; FTRINITY_DN58465_c1_g1_i20 550 570 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_211422; FTRINITY_DN58389_c2_g4_i4 413 433 CTTTGGTGTTGTCTTTTCTGC BLAST psRNATarget
Ll_transcript_255415; FTRINITY_DN59109_c0_g1_i15 264 284 TTACGGTGCCATCTCTCCTGC BLAST psRNATarget
Ll_transcript_255394; FTRINITY_DN59109_c0_g1_i2 264 284 TTACGGTGCCATCTCTCCTGC BLAST psRNATarget
Ll_transcript_255404; FTRINITY_DN59109_c0_g1_i8 264 284 TTACGGTGCCATCTCTCCTGC BLAST psRNATarget
Ll_transcript_32150; FTRINITY_DN58465_c1_g1_i13 1771 1791 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32133; FTRINITY_DN58465_c1_g1_i2 1773 1793 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_255416; FTRINITY_DN59109_c0_g1_i16 264 284 TTACGGTGCCATCTCTCCTGC BLAST psRNATarget
Ll_transcript_255406; FTRINITY_DN59109_c0_g1_i10 264 284 TTACGGTGCCATCTCTCCTGC BLAST psRNATarget
Ll_transcript_32163; FTRINITY_DN58465_c1_g1_i22 1771 1791 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32159; FTRINITY_DN58465_c1_g1_i19 1773 1793 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32152; FTRINITY_DN58465_c1_g1_i15 1771 1791 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32164; FTRINITY_DN58465_c1_g1_i23 1773 1793 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32136; FTRINITY_DN58465_c1_g1_i3 1771 1791 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32145; FTRINITY_DN58465_c1_g1_i9 1771 1791 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32170; FTRINITY_DN58465_c1_g1_i25 1773 1793 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32154; FTRINITY_DN58465_c1_g1_i16 1771 1791 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32175; FTRINITY_DN58465_c1_g1_i27 1773 1793 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32146; FTRINITY_DN58465_c1_g1_i10 1771 1791 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32151; FTRINITY_DN58465_c1_g1_i14 1773 1793 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32177; FTRINITY_DN58465_c1_g1_i29 1771 1791 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32173; FTRINITY_DN58465_c1_g1_i26 1773 1793 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32144; FTRINITY_DN58465_c1_g1_i8 1771 1791 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32147; FTRINITY_DN58465_c1_g1_i11 1771 1791 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32156; FTRINITY_DN58465_c1_g1_i17 1771 1791 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32131; FTRINITY_DN58465_c1_g1_i1 1771 1791 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_32161; FTRINITY_DN58465_c1_g1_i21 1773 1793 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_23082; FTRINITY_DN53894_c14_g1_i1 159 179 ACTTGGTGTCATCATTCCTGT BLAST psRNATarget
Ll_transcript_233741; FTRINITY_DN52806_c0_g3_i3 396 416 CCTTGGTGTCATCTCTCATTA BLAST psRNATarget
Ll_transcript_233747; FTRINITY_DN52806_c0_g3_i6 396 416 CCTTGGTGTCATCTCTCATTA BLAST psRNATarget
Ll_transcript_102665; FTRINITY_DN54998_c6_g5_i4 407 427 TCATGGTGATATCTCTCCTGA BLAST psRNATarget
Ll_transcript_102667; FTRINITY_DN54998_c6_g5_i5 493 513 TCATGGTGATATCTCTCCTGA BLAST psRNATarget
Ll_transcript_173313; FTRINITY_DN52161_c0_g2_i1 675 695 TGTCGGGTTCATTTTTTCTGA BLAST psRNATarget
Ll_transcript_102653; FTRINITY_DN54998_c6_g5_i1 635 655 TCATGGTGATATCTCTCCTGA BLAST psRNATarget
Ll_transcript_100864; FTRINITY_DN57189_c0_g2_i8 2801 2821 CTTTGGTGTCATTCTTCTTGA BLAST psRNATarget
Ll_transcript_100866; FTRINITY_DN57189_c0_g2_i10 2892 2912 CTTTGGTGTCATTCTTCTTGA BLAST psRNATarget
Ll_transcript_173330; FTRINITY_DN52161_c0_g2_i6 1748 1768 TGTCGGGTTCATTTTTTCTGA BLAST psRNATarget
Ll_transcript_173324; FTRINITY_DN52161_c0_g2_i3 1748 1768 TGTCGGGTTCATTTTTTCTGA BLAST psRNATarget
Ll_transcript_202586; FTRINITY_DN56475_c2_g1_i27 948 968 TTTTGGTGTGGTCTTTCTTGA BLAST psRNATarget
Ll_transcript_23062; FTRINITY_DN53894_c7_g3_i1 1851 1871 TTTTGGTGTCATTTTATCTGA BLAST psRNATarget
Ll_transcript_202587; FTRINITY_DN56475_c2_g1_i28 1568 1588 TTTTGGTGTGGTCTTTCTTGA BLAST psRNATarget
Ll_transcript_499040; TRINITY_DN50288_c1_g11_i1 1706 1726 TTTCGGGGTCATCTTTCTTGA BLAST psRNATarget
Ll_transcript_499043; TRINITY_DN50288_c1_g11_i3 2875 2895 TTTCGGGGTCATCTTTCTTGA BLAST psRNATarget
Ll_transcript_380205; TRINITY_DN51495_c1_g2_i12 1542 1562 TGTTGTTGTCGTCTCTTCTGA BLAST psRNATarget
Ll_transcript_380198; TRINITY_DN51495_c1_g2_i6 1488 1508 TGTTGTTGTCGTCTCTTCTGA BLAST psRNATarget
Ll_transcript_380204; TRINITY_DN51495_c1_g2_i11 1639 1659 TGTTGTTGTCGTCTCTTCTGA BLAST psRNATarget
Ll_transcript_380201; TRINITY_DN51495_c1_g2_i8 1779 1799 TGTTGTTGTCGTCTCTTCTGA BLAST psRNATarget
Ll_transcript_297305; TRINITY_DN51780_c3_g3_i12 453 473 CCTCGGTGTCATTTCTATTGA BLAST psRNATarget
Ll_transcript_297309; TRINITY_DN51780_c3_g3_i16 494 514 CCTCGGTGTCATTTCTATTGA BLAST psRNATarget
Ll_transcript_492662; TRINITY_DN52840_c3_g2_i1 3707 3727 GATCTGTGTCTTCTCTCCTGA BLAST psRNATarget
Ll_transcript_445956; TRINITY_DN51845_c0_g4_i7 1916 1936 CATTGGCATCATCTCTCCTGA BLAST psRNATarget
Ll_transcript_445955; TRINITY_DN51845_c0_g4_i6 2017 2037 CATTGGCATCATCTCTCCTGA BLAST psRNATarget
Ll_transcript_344400; TRINITY_DN50455_c2_g9_i2 723 743 GGTTGTTGTCATTTCTTTTGA BLAST psRNATarget
Ll_transcript_344385; TRINITY_DN50455_c2_g9_i1 818 838 GGTTGTTGTCATTTCTTTTGA BLAST psRNATarget
Ll_transcript_291318; TRINITY_DN49171_c1_g2_i10 1475 1495 CATTGGTGTTATTTCTTCTGT BLAST psRNATarget
Ll_transcript_291307; TRINITY_DN49171_c1_g2_i6 1475 1495 CATTGGTGTTATTTCTTCTGT BLAST psRNATarget
Ll_transcript_291330; TRINITY_DN49171_c1_g2_i15 3548 3568 CATTGGTGTTATTTCTTCTGT BLAST psRNATarget
Ll_transcript_291317; TRINITY_DN49171_c1_g2_i9 3556 3576 CATTGGTGTTATTTCTTCTGT BLAST psRNATarget
Ll_transcript_291305; TRINITY_DN49171_c1_g2_i5 4463 4483 CATTGGTGTTATTTCTTCTGT BLAST psRNATarget
Ll_transcript_305320; TRINITY_DN52290_c3_g2_i24 588 608 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_305307; TRINITY_DN52290_c3_g2_i15 588 608 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_305290; TRINITY_DN52290_c3_g2_i4 703 723 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_305323; TRINITY_DN52290_c3_g2_i27 1076 1096 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_376990; TRINITY_DN50792_c6_g3_i1 1141 1161 CCTCGGTGTTATCTTTCTGGA BLAST psRNATarget
Ll_transcript_305306; TRINITY_DN52290_c3_g2_i14 588 608 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_305314; TRINITY_DN52290_c3_g2_i21 703 723 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_305326; TRINITY_DN52290_c3_g2_i30 588 608 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_305288; TRINITY_DN52290_c3_g2_i2 703 723 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_305325; TRINITY_DN52290_c3_g2_i29 1076 1096 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_305289; TRINITY_DN52290_c3_g2_i3 1076 1096 TAACGGTGTCATGTTTCCTGA BLAST psRNATarget
Ll_transcript_417445; TRINITY_DN46040_c1_g1_i4 1393 1413 AGTTGGTGTCATTTCTCCTAT BLAST psRNATarget
Ll_transcript_417451; TRINITY_DN46040_c1_g1_i10 1486 1506 AGTTGGTGTCATTTCTCCTAT BLAST psRNATarget
Ll_transcript_417452; TRINITY_DN46040_c1_g1_i11 1991 2011 AGTTGGTGTCATTTCTCCTAT BLAST psRNATarget
Ll_transcript_417454; TRINITY_DN46040_c1_g1_i13 2044 2064 AGTTGGTGTCATTTCTCCTAT BLAST psRNATarget
Ll_transcript_417449; TRINITY_DN46040_c1_g1_i8 2531 2551 AGTTGGTGTCATTTCTCCTAT BLAST psRNATarget
Ll_transcript_417446; TRINITY_DN46040_c1_g1_i5 3129 3149 AGTTGGTGTCATTTCTCCTAT BLAST psRNATarget
Ll_transcript_421042; TRINITY_DN48751_c2_g5_i1 754 774 GGTTGGTGTTATTTCTGCTGG BLAST psRNATarget
Ll_transcript_304481; TRINITY_DN52257_c1_g9_i1 325 345 CTTTGGTGTTGTCTTTTCTGC BLAST psRNATarget
Ll_transcript_462967; TRINITY_DN52603_c0_g1_i3 265 285 TTACGGTGCCATCTCTCCTGC BLAST psRNATarget
Ll_transcript_462965; TRINITY_DN52603_c0_g1_i1 265 285 TTACGGTGCCATCTCTCCTGC BLAST psRNATarget
Ll_transcript_462971; TRINITY_DN52603_c0_g1_i6 265 285 TTACGGTGCCATCTCTCCTGC BLAST psRNATarget
Ll_transcript_462969; TRINITY_DN52603_c0_g1_i5 265 285 TTACGGTGCCATCTCTCCTGC BLAST psRNATarget
Ll_transcript_296365; TRINITY_DN51746_c1_g1_i9 1716 1736 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_296391; TRINITY_DN51746_c1_g1_i31 1716 1736 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_296366; TRINITY_DN51746_c1_g1_i10 1716 1736 ACAAGGTGTCATTTTTCTTGA BLAST psRNATarget
Ll_transcript_470681; TRINITY_DN66690_c0_g1_i1 81 101 GATTGGTGTTATTTTTCTTGT BLAST psRNATarget
Ll_transcript_307183; TRINITY_DN52238_c6_g1_i1 104 124 CTTTGGTGTCATTCTTCTTGA BLAST psRNATarget
Ll_transcript_371346; TRINITY_DN47069_c4_g1_i1 522 542 ACTTGGTGTCATCATTCCTGT BLAST psRNATarget
Ll_transcript_314965; TRINITY_DN46736_c0_g1_i1 389 409 CCTTGGTGTCATCTCTCATTA BLAST psRNATarget
Ll_transcript_371384; TRINITY_DN47053_c8_g4_i1 425 445 TCATGGTGATATCTCTCCTGA BLAST psRNATarget
Ll_transcript_307184; TRINITY_DN52238_c6_g1_i2 608 628 CTTTGGTGTCATTCTTCTTGA BLAST psRNATarget
Ll_transcript_371392; TRINITY_DN47053_c8_g4_i4 511 531 TCATGGTGATATCTCTCCTGA BLAST psRNATarget
Ll_transcript_371388; TRINITY_DN47053_c8_g4_i2 653 673 TCATGGTGATATCTCTCCTGA BLAST psRNATarget
Ll_transcript_494925; TRINITY_DN43651_c0_g1_i7 1665 1685 TGTCGGGTTCATTTTTTCTGA BLAST psRNATarget
Ll_transcript_286495; TRINITY_DN48803_c1_g2_i2 1259 1279 TTTTGGTGTCATTTTATCTGA BLAST psRNATarget
Ll_transcript_344277; TRINITY_DN50424_c2_g1_i19 955 975 TTTTGGTGTGGTCTTTCTTGA BLAST psRNATarget
Ll_transcript_344286; TRINITY_DN50424_c2_g1_i23 955 975 TTTTGGTGTGGTCTTTCTTGA BLAST psRNATarget

Expression of miRNA 220


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)