Transcript | Ll_transcript_53643 |
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CDS coordinates | 592-4671 (+) |
Peptide sequence | MATSQGLAMNLPILDGRNYNHWCVQMKAIFTFQECIDVVKAGIQERDENSVEFREAMKRDSKAIFLIHQCVDTANFEKISSASSSKEAWEILEQCYTGNLKIKKVKLQTLRRQYELLQMDEDEEIGDYLTRIRTLTNLMKGCGKKISEKSIVEKVLRTLSSRFDNIVVAIEESKDIEALKVEELQSSLEAHEQRFIERQANRQNQQALSAQFRVKKGSSQVIKSKEKGKWKVDAESVRSKGSKFQKTSTCKTSQESEAARSKKSTTQLVGGKKKDKSKIQCFNCRNWGHYASECKAKKSVNAKEEEARLAKGDTSESEEDVLLLALKESSDDALLMVREHCDQGTNTWYLDTGCSNHMTGNKDWFESLDNSIHTKIKFADDSVINAEGVGRVLIKKRDGSSSYIKDVLYVPKMKSNLLSLGQLLEKGYIMRMEDKLLKVFNNKGSLILKAPLSQNRTFKIGIQKGNHQCLESVIDENWLWHQRLGHLNFKSLEHLSKDGLVDGLPMIRTPTSLCEECITSKQTRNSFSTNIPTKSTKHLEIVYTDVCGPFEVDSLGGSKYFLTFKDDFTRKLWVYLLKKKSEVFSKFKSFKALVENQCGRKLSLLRSDGGGEYTSHEFHEFCETEGVTHEIIAPYTPQHNGAAERVNRTILDMARSMLKTKRLPKNLWAEAVSTAAYILNRCPTKRLKDKTPEEAWTGLKPSIKHLRVFGSVCYKHTPDFKRQKLDDKGVKLVLLGYHSSGAYKVLDPETKVISFSRDLKFDETQVWDWTAQVRAASIRQVVMPIVESQNSEDSNAISESNARVTERPQRQRNLPLRLRDYEVFEDSEITQEGDLVHMALLAEVEPISFDEAVKDVCWIEAMKEEISSIEKNCTWQLTTLPKGKKAIAVKWVYKVKLRPDGTISKYKARLVAKGFLQKPGLDFDEVYAPVARMETVRLVIAIASAKGWPICQMDVKSAFLNGPLDKEVFVKQPPGFEVADQTQKVYKLQKALYGLKQAPRAWNRRIDSFLTQLGFSKCIIEHGIYTKDIGSETQIIICLYVDDLLITGSMESEIEWLKSKLNLEFEMSDLGALAYFLGIEFARTEAGILMHQRKYISDVLGRFEMLECNPASTPVEVGHNLSINNSDEQLIESTPYRQVIGSLRYICNSRPDLAFGVGLVSRFMEKPAHSHMQAVKRILRYLKSSLDYGVLFPANSGNHSIYGYSDADWSGDRDDRKSTSGYLFKYGEAVVSWCSRKQNSVALSSCEAEYVAACLGAQQALWLQTLGTELGVQKEEKMVLFVDNKSAINLAKNPISHGRSKHIETKYHFLRDQVEKGNLHLEFCRSKDQQADLLTKALKGEAFQEQRKQLGVISLTSMN* |
ORF Type | complete |
Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.76% of identity |
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Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 34.96% of identity |
Eggnog | - |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_020987654.1) |
Pfam | gag-polypeptide of LTR copia-type (PF14223.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |
Grab and slide to change sequence position
Alignmet by MSA Viewer