miRNA 238 details

Id Micro238
SequenceTCGATAAACCTCTGCATCCA 
Annotated namesgma-miR162a; zma-miR162-3p; 
Annotated pre-miRNANone

Targets of miRNA 238

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_9019; FTRINITY_DN56822_c2_g1_i1 337 356 TGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_9022; FTRINITY_DN56822_c2_g1_i2 337 356 TGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_150701; FTRINITY_DN57639_c1_g4_i2 315 334 TGGAGGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_9045; FTRINITY_DN56822_c2_g1_i8 337 356 TGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_9028; FTRINITY_DN56822_c2_g1_i5 337 356 TGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_180387; FTRINITY_DN53592_c3_g7_i1 150 169 TGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_60296; FTRINITY_DN56270_c0_g2_i3 3891 3911 TGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_60293; FTRINITY_DN56270_c0_g2_i1 3891 3911 TGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_60295; FTRINITY_DN56270_c0_g2_i2 3891 3911 TGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_20201; FTRINITY_DN55156_c0_g2_i1 36 55 AGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_85400; FTRINITY_DN56640_c4_g1_i2 125 144 AGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_20200; FTRINITY_DN55156_c0_g1_i1 36 55 AGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_85406; FTRINITY_DN56640_c4_g1_i4 224 243 AGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_85398; FTRINITY_DN56640_c4_g1_i1 1036 1055 AGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_85407; FTRINITY_DN56640_c4_g1_i5 224 243 AGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_207380; FTRINITY_DN52698_c1_g1_i1 121 140 GGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_207382; FTRINITY_DN52698_c1_g1_i3 279 298 GGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_207389; FTRINITY_DN52698_c1_g1_i6 397 416 GGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_207383; FTRINITY_DN52698_c1_g1_i4 397 416 GGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_207381; FTRINITY_DN52698_c1_g1_i2 397 416 GGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_68040; FTRINITY_DN55061_c1_g3_i10 3261 3280 ATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_68037; FTRINITY_DN55061_c1_g3_i8 3365 3384 ATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_68033; FTRINITY_DN55061_c1_g3_i5 3606 3625 ATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_86784; FTRINITY_DN52474_c1_g1_i1 2312 2331 TGAAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_86792; FTRINITY_DN52474_c1_g1_i6 2312 2331 TGAAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_273055; FTRINITY_DN54245_c4_g9_i1 54 73 ATGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_273055; FTRINITY_DN54245_c4_g9_i1 95 114 ACGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_273055; FTRINITY_DN54245_c4_g9_i1 177 196 ATGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_119458; FTRINITY_DN58281_c6_g7_i1 251 270 AAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_119450; FTRINITY_DN58281_c6_g4_i3 73 92 AAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_167625; FTRINITY_DN57327_c0_g4_i1 330 349 ATGTTGCAGAGGTTTATCAA BLAST psRNATarget
Ll_transcript_199485; FTRINITY_DN49991_c0_g1_i1 1716 1735 AAGAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_57555; FTRINITY_DN57880_c0_g2_i6 417 436 TGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_57556; FTRINITY_DN57880_c0_g2_i7 417 436 TGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_191120; FTRINITY_DN55754_c0_g1_i4 6 25 CAGACGCATAGGTTTATCGA BLAST psRNATarget
Ll_transcript_57541; FTRINITY_DN57880_c0_g2_i1 417 436 TGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_194224; FTRINITY_DN59704_c0_g1_i1 107 126 GGAATGTAGAGGCTTATTGA BLAST psRNATarget
Ll_transcript_57544; FTRINITY_DN57880_c0_g2_i2 417 436 TGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_157964; FTRINITY_DN54760_c1_g1_i15 3160 3179 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157951; FTRINITY_DN54760_c1_g1_i3 3203 3222 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157952; FTRINITY_DN54760_c1_g1_i4 3519 3538 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157953; FTRINITY_DN54760_c1_g1_i5 3652 3671 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157972; FTRINITY_DN54760_c1_g1_i22 3670 3689 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157971; FTRINITY_DN54760_c1_g1_i21 3741 3760 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157962; FTRINITY_DN54760_c1_g1_i13 3843 3862 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157969; FTRINITY_DN54760_c1_g1_i19 3861 3880 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157970; FTRINITY_DN54760_c1_g1_i20 3932 3951 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_119451; FTRINITY_DN58281_c6_g4_i4 1468 1487 AAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_191131; FTRINITY_DN55754_c0_g1_i9 6 25 CAGACGCATAGGTTTATCGA BLAST psRNATarget
Ll_transcript_60540; FTRINITY_DN56213_c1_g2_i3 1053 1072 AGGGTGGAGAGCTTTATTGA BLAST psRNATarget
Ll_transcript_309318; TRINITY_DN47128_c2_g1_i14 362 381 TGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_286414; TRINITY_DN48845_c8_g1_i1 351 370 TGGAGGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_309323; TRINITY_DN47128_c2_g1_i18 362 381 TGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_309306; TRINITY_DN47128_c2_g1_i4 362 381 TGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_326074; TRINITY_DN48010_c4_g1_i3 1572 1591 TGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_326073; TRINITY_DN48010_c4_g1_i2 1572 1591 TGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_326076; TRINITY_DN48010_c4_g1_i5 1969 1988 TGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_326075; TRINITY_DN48010_c4_g1_i4 1969 1988 TGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_371191; TRINITY_DN47079_c3_g3_i6 3903 3923 TGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_371184; TRINITY_DN47079_c3_g3_i5 3903 3923 TGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_371155; TRINITY_DN47079_c3_g3_i2 3903 3923 TGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_371153; TRINITY_DN47079_c3_g3_i1 3903 3923 TGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_371169; TRINITY_DN47079_c3_g3_i4 3903 3923 TGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_424080; TRINITY_DN47901_c0_g1_i1 48 67 AGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_454687; TRINITY_DN49775_c1_g3_i2 173 192 AGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_344387; TRINITY_DN50455_c2_g8_i2 276 295 AGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_344397; TRINITY_DN50455_c2_g8_i4 326 345 AGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_424082; TRINITY_DN47901_c0_g1_i3 48 67 AGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_454686; TRINITY_DN49775_c1_g3_i1 173 192 AGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_391571; TRINITY_DN46466_c2_g2_i2 424 443 GGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_520876; TRINITY_DN46584_c0_g1_i6 1176 1195 ATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_520888; TRINITY_DN46584_c0_g1_i16 1228 1247 ATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_520889; TRINITY_DN46584_c0_g1_i17 1533 1552 ATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_520882; TRINITY_DN46584_c0_g1_i11 1548 1567 ATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_520893; TRINITY_DN46584_c0_g1_i19 2122 2141 ATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_520878; TRINITY_DN46584_c0_g1_i8 2965 2984 ATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_520881; TRINITY_DN46584_c0_g1_i10 3707 3726 ATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_381539; TRINITY_DN51416_c5_g2_i9 2312 2331 TGAAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_381528; TRINITY_DN51416_c5_g2_i5 2312 2331 TGAAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_381526; TRINITY_DN51416_c5_g2_i4 2312 2331 TGAAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_387592; TRINITY_DN50915_c1_g4_i1 251 270 AAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_387603; TRINITY_DN50915_c1_g1_i8 188 207 AAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_335206; TRINITY_DN44770_c0_g1_i1 1708 1727 AAGAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_387593; TRINITY_DN50915_c1_g1_i3 268 287 AAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_387597; TRINITY_DN50915_c1_g1_i6 321 340 AAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_344204; TRINITY_DN50401_c1_g2_i14 2859 2878 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_387029; TRINITY_DN50970_c0_g1_i1 1426 1445 TGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_387031; TRINITY_DN50970_c0_g1_i3 1505 1524 TGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_387033; TRINITY_DN50970_c0_g1_i5 1426 1445 TGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_387034; TRINITY_DN50970_c0_g1_i6 1444 1463 TGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_387038; TRINITY_DN50970_c0_g1_i9 1505 1524 TGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_344208; TRINITY_DN50401_c1_g2_i18 3058 3077 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_387605; TRINITY_DN50915_c1_g1_i9 188 207 AAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_344211; TRINITY_DN50401_c1_g2_i21 3417 3436 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_387596; TRINITY_DN50915_c1_g1_i5 268 287 AAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_344203; TRINITY_DN50401_c1_g2_i13 3778 3797 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_344207; TRINITY_DN50401_c1_g2_i17 3653 3672 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_344199; TRINITY_DN50401_c1_g2_i10 3844 3863 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_344209; TRINITY_DN50401_c1_g2_i19 4137 4156 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_387602; TRINITY_DN50915_c1_g1_i7 188 207 AAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_344191; TRINITY_DN50401_c1_g2_i3 4328 4347 TTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_417622; TRINITY_DN46049_c2_g2_i3 1641 1660 ATGTTGCAGAGGTTTATCAA BLAST psRNATarget
Ll_transcript_417619; TRINITY_DN46049_c2_g2_i1 1727 1746 ATGTTGCAGAGGTTTATCAA BLAST psRNATarget
Ll_transcript_293186; TRINITY_DN49162_c2_g6_i1 299 318 AGGGTGGAGAGCTTTATTGA BLAST psRNATarget
Ll_transcript_414243; TRINITY_DN49658_c0_g1_i11 2152 2171 GGAATGTAGAGGCTTATTGA BLAST psRNATarget

Expression of miRNA 238


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)