miRNA 239 details

Id Micro239
SequenceTCGATAAACCTCTGCATCCAG 
Annotated namesmtr-miR162; bra-miR162-3p; ghr-miR162a; cme-miR162; vvi-miR162; stu-miR162a-3p; aly-miR162a-3p; nta-miR162b; vun-miR162; csi-miR162-3p; nta-miR162a; gma-miR162b; mes-miR162; osa-miR162a; lus-miR162a; sbi-miR162; ppe-miR162; ath-miR162b-3p; lus-miR162b; tcc-miR162; ptc-miR162a; rco-miR162; stu-miR162b-3p; mdm-miR162a; ptc-miR162b; hpe-miR162a; cpa-miR162a; htu-miR162a; pde-miR162; gma-miR162c; aly-miR162b-3p; aau-miR162; mdm-miR162b; sly-miR162; ath-miR162a-3p; 
Annotated pre-miRNAgma-MIR162c

Targets of miRNA 239

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_9019; FTRINITY_DN56822_c2_g1_i1 336 356 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_9022; FTRINITY_DN56822_c2_g1_i2 336 356 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_150701; FTRINITY_DN57639_c1_g4_i2 314 334 CTGGAGGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_9045; FTRINITY_DN56822_c2_g1_i8 336 356 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_9028; FTRINITY_DN56822_c2_g1_i5 336 356 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_60296; FTRINITY_DN56270_c0_g2_i3 3890 3911 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_60293; FTRINITY_DN56270_c0_g2_i1 3890 3911 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_60295; FTRINITY_DN56270_c0_g2_i2 3890 3911 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_180387; FTRINITY_DN53592_c3_g7_i1 149 169 ATGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_20201; FTRINITY_DN55156_c0_g2_i1 35 55 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_85400; FTRINITY_DN56640_c4_g1_i2 124 144 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_20200; FTRINITY_DN55156_c0_g1_i1 35 55 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_85406; FTRINITY_DN56640_c4_g1_i4 223 243 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_85398; FTRINITY_DN56640_c4_g1_i1 1035 1055 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_85407; FTRINITY_DN56640_c4_g1_i5 223 243 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_207380; FTRINITY_DN52698_c1_g1_i1 120 140 AGGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_207382; FTRINITY_DN52698_c1_g1_i3 278 298 AGGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_207389; FTRINITY_DN52698_c1_g1_i6 396 416 AGGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_207383; FTRINITY_DN52698_c1_g1_i4 396 416 AGGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_207381; FTRINITY_DN52698_c1_g1_i2 396 416 AGGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_86784; FTRINITY_DN52474_c1_g1_i1 2311 2331 TTGAAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_86792; FTRINITY_DN52474_c1_g1_i6 2311 2331 TTGAAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_57555; FTRINITY_DN57880_c0_g2_i6 416 436 TTGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_57556; FTRINITY_DN57880_c0_g2_i7 416 436 TTGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_68040; FTRINITY_DN55061_c1_g3_i10 3260 3280 TATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_68037; FTRINITY_DN55061_c1_g3_i8 3364 3384 TATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_68033; FTRINITY_DN55061_c1_g3_i5 3605 3625 TATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_57541; FTRINITY_DN57880_c0_g2_i1 416 436 TTGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_57544; FTRINITY_DN57880_c0_g2_i2 416 436 TTGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_157964; FTRINITY_DN54760_c1_g1_i15 3159 3179 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157951; FTRINITY_DN54760_c1_g1_i3 3202 3222 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157952; FTRINITY_DN54760_c1_g1_i4 3518 3538 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157953; FTRINITY_DN54760_c1_g1_i5 3651 3671 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157972; FTRINITY_DN54760_c1_g1_i22 3669 3689 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157971; FTRINITY_DN54760_c1_g1_i21 3740 3760 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157962; FTRINITY_DN54760_c1_g1_i13 3842 3862 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157969; FTRINITY_DN54760_c1_g1_i19 3860 3880 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_157970; FTRINITY_DN54760_c1_g1_i20 3931 3951 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_273055; FTRINITY_DN54245_c4_g9_i1 53 73 AATGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_273055; FTRINITY_DN54245_c4_g9_i1 94 114 AACGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_273055; FTRINITY_DN54245_c4_g9_i1 176 196 AATGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_119458; FTRINITY_DN58281_c6_g7_i1 250 270 AAAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_119450; FTRINITY_DN58281_c6_g4_i3 72 92 AAAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_199485; FTRINITY_DN49991_c0_g1_i1 1715 1735 GAAGAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_167625; FTRINITY_DN57327_c0_g4_i1 329 349 GATGTTGCAGAGGTTTATCAA BLAST psRNATarget
Ll_transcript_191120; FTRINITY_DN55754_c0_g1_i4 5 25 GCAGACGCATAGGTTTATCGA BLAST psRNATarget
Ll_transcript_194224; FTRINITY_DN59704_c0_g1_i1 106 126 AGGAATGTAGAGGCTTATTGA BLAST psRNATarget
Ll_transcript_119451; FTRINITY_DN58281_c6_g4_i4 1467 1487 AAAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_191131; FTRINITY_DN55754_c0_g1_i9 5 25 GCAGACGCATAGGTTTATCGA BLAST psRNATarget
Ll_transcript_309318; TRINITY_DN47128_c2_g1_i14 361 381 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_286414; TRINITY_DN48845_c8_g1_i1 350 370 CTGGAGGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_309323; TRINITY_DN47128_c2_g1_i18 361 381 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_309306; TRINITY_DN47128_c2_g1_i4 361 381 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_371191; TRINITY_DN47079_c3_g3_i6 3902 3923 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_371184; TRINITY_DN47079_c3_g3_i5 3902 3923 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_371155; TRINITY_DN47079_c3_g3_i2 3902 3923 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_371153; TRINITY_DN47079_c3_g3_i1 3902 3923 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_371169; TRINITY_DN47079_c3_g3_i4 3902 3923 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_326074; TRINITY_DN48010_c4_g1_i3 1571 1591 ATGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_326073; TRINITY_DN48010_c4_g1_i2 1571 1591 ATGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_326076; TRINITY_DN48010_c4_g1_i5 1968 1988 ATGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_326075; TRINITY_DN48010_c4_g1_i4 1968 1988 ATGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_424080; TRINITY_DN47901_c0_g1_i1 47 67 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_454687; TRINITY_DN49775_c1_g3_i2 172 192 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_344387; TRINITY_DN50455_c2_g8_i2 275 295 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_344397; TRINITY_DN50455_c2_g8_i4 325 345 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_424082; TRINITY_DN47901_c0_g1_i3 47 67 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_454686; TRINITY_DN49775_c1_g3_i1 172 192 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_391571; TRINITY_DN46466_c2_g2_i2 423 443 AGGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_381539; TRINITY_DN51416_c5_g2_i9 2311 2331 TTGAAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_381528; TRINITY_DN51416_c5_g2_i5 2311 2331 TTGAAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_381526; TRINITY_DN51416_c5_g2_i4 2311 2331 TTGAAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_520876; TRINITY_DN46584_c0_g1_i6 1175 1195 TATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_520888; TRINITY_DN46584_c0_g1_i16 1227 1247 TATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_520889; TRINITY_DN46584_c0_g1_i17 1532 1552 TATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_520882; TRINITY_DN46584_c0_g1_i11 1547 1567 TATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_520893; TRINITY_DN46584_c0_g1_i19 2121 2141 TATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_344204; TRINITY_DN50401_c1_g2_i14 2858 2878 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_520878; TRINITY_DN46584_c0_g1_i8 2964 2984 TATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_387029; TRINITY_DN50970_c0_g1_i1 1425 1445 TTGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_387031; TRINITY_DN50970_c0_g1_i3 1504 1524 TTGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_387033; TRINITY_DN50970_c0_g1_i5 1425 1445 TTGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_387034; TRINITY_DN50970_c0_g1_i6 1443 1463 TTGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_387038; TRINITY_DN50970_c0_g1_i9 1504 1524 TTGGCTGGGGAGGTTTATTGG BLAST psRNATarget
Ll_transcript_344208; TRINITY_DN50401_c1_g2_i18 3057 3077 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_520881; TRINITY_DN46584_c0_g1_i10 3706 3726 TATGATGTAGGGGTTTGTTGG BLAST psRNATarget
Ll_transcript_344211; TRINITY_DN50401_c1_g2_i21 3416 3436 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_344203; TRINITY_DN50401_c1_g2_i13 3777 3797 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_344207; TRINITY_DN50401_c1_g2_i17 3652 3672 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_344199; TRINITY_DN50401_c1_g2_i10 3843 3863 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_344209; TRINITY_DN50401_c1_g2_i19 4136 4156 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_344191; TRINITY_DN50401_c1_g2_i3 4327 4347 TTTGGTGGAGGGGTTTATTGA BLAST psRNATarget
Ll_transcript_387592; TRINITY_DN50915_c1_g4_i1 250 270 AAAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_387603; TRINITY_DN50915_c1_g1_i8 187 207 AAAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_335206; TRINITY_DN44770_c0_g1_i1 1707 1727 GAAGAAGCAGAGGTTTATTGT BLAST psRNATarget
Ll_transcript_387593; TRINITY_DN50915_c1_g1_i3 267 287 AAAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_387597; TRINITY_DN50915_c1_g1_i6 320 340 AAAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_387605; TRINITY_DN50915_c1_g1_i9 187 207 AAAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_387596; TRINITY_DN50915_c1_g1_i5 267 287 AAAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_387602; TRINITY_DN50915_c1_g1_i7 187 207 AAAGATTCAGGGGTTTGTTGA BLAST psRNATarget
Ll_transcript_417622; TRINITY_DN46049_c2_g2_i3 1640 1660 GATGTTGCAGAGGTTTATCAA BLAST psRNATarget
Ll_transcript_417619; TRINITY_DN46049_c2_g2_i1 1726 1746 GATGTTGCAGAGGTTTATCAA BLAST psRNATarget

Expression of miRNA 239


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)