miRNA 242 details

Id Micro242
SequenceTCGATAAGCCTCTGCATCCAG 
Annotated namesosa-miR162b; 
Annotated pre-miRNANone

Targets of miRNA 242

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_207380; FTRINITY_DN52698_c1_g1_i1 120 140 AGGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_207382; FTRINITY_DN52698_c1_g1_i3 278 298 AGGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_207389; FTRINITY_DN52698_c1_g1_i6 396 416 AGGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_207383; FTRINITY_DN52698_c1_g1_i4 396 416 AGGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_207381; FTRINITY_DN52698_c1_g1_i2 396 416 AGGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_194224; FTRINITY_DN59704_c0_g1_i1 106 126 AGGAATGTAGAGGCTTATTGA BLAST psRNATarget
Ll_transcript_9019; FTRINITY_DN56822_c2_g1_i1 336 356 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_9022; FTRINITY_DN56822_c2_g1_i2 336 356 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_150701; FTRINITY_DN57639_c1_g4_i2 314 334 CTGGAGGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_9045; FTRINITY_DN56822_c2_g1_i8 336 356 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_9028; FTRINITY_DN56822_c2_g1_i5 336 356 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_222304; FTRINITY_DN53173_c3_g1_i4 691 711 CAGGAAGCAAAGGCTTATTGA BLAST psRNATarget
Ll_transcript_222302; FTRINITY_DN53173_c3_g1_i3 924 944 CAGGAAGCAAAGGCTTATTGA BLAST psRNATarget
Ll_transcript_222300; FTRINITY_DN53173_c3_g1_i1 1247 1267 CAGGAAGCAAAGGCTTATTGA BLAST psRNATarget
Ll_transcript_251996; FTRINITY_DN52550_c0_g4_i2 787 807 GAGGATGGAGAGGCTTACTGA BLAST psRNATarget
Ll_transcript_251991; FTRINITY_DN52550_c0_g4_i1 886 906 GAGGATGGAGAGGCTTACTGA BLAST psRNATarget
Ll_transcript_60296; FTRINITY_DN56270_c0_g2_i3 3890 3911 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_60293; FTRINITY_DN56270_c0_g2_i1 3890 3911 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_60295; FTRINITY_DN56270_c0_g2_i2 3890 3911 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_180387; FTRINITY_DN53592_c3_g7_i1 149 169 ATGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_143323; FTRINITY_DN54056_c3_g1_i10 539 559 AAAGATGCAGAGGCTTATCCG BLAST psRNATarget
Ll_transcript_143313; FTRINITY_DN54056_c3_g1_i1 539 559 AAAGATGCAGAGGCTTATCCG BLAST psRNATarget
Ll_transcript_143319; FTRINITY_DN54056_c3_g1_i7 539 559 AAAGATGCAGAGGCTTATCCG BLAST psRNATarget
Ll_transcript_143318; FTRINITY_DN54056_c3_g1_i6 539 559 AAAGATGCAGAGGCTTATCCG BLAST psRNATarget
Ll_transcript_143322; FTRINITY_DN54056_c3_g1_i9 539 559 AAAGATGCAGAGGCTTATCCG BLAST psRNATarget
Ll_transcript_143314; FTRINITY_DN54056_c3_g1_i2 539 559 AAAGATGCAGAGGCTTATCCG BLAST psRNATarget
Ll_transcript_196647; FTRINITY_DN54308_c1_g11_i2 420 440 TGATATGCAGAGGCTTGTTGG BLAST psRNATarget
Ll_transcript_196646; FTRINITY_DN54308_c1_g11_i1 420 440 TGATATGCAGAGGCTTGTTGG BLAST psRNATarget
Ll_transcript_20201; FTRINITY_DN55156_c0_g2_i1 35 55 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_85400; FTRINITY_DN56640_c4_g1_i2 124 144 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_20200; FTRINITY_DN55156_c0_g1_i1 35 55 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_85406; FTRINITY_DN56640_c4_g1_i4 223 243 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_85398; FTRINITY_DN56640_c4_g1_i1 1035 1055 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_85407; FTRINITY_DN56640_c4_g1_i5 223 243 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_215213; FTRINITY_DN57782_c6_g2_i2 1663 1683 TAAAATCCAGAGGCTTATTGA BLAST psRNATarget
Ll_transcript_215215; FTRINITY_DN57782_c6_g2_i3 1895 1915 TAAAATCCAGAGGCTTATTGA BLAST psRNATarget
Ll_transcript_222301; FTRINITY_DN53173_c3_g1_i2 837 857 CCGGAAGCAAAGGCTTGTTGA BLAST psRNATarget
Ll_transcript_222305; FTRINITY_DN53173_c3_g1_i5 1250 1270 CCGGAAGCAAAGGCTTGTTGA BLAST psRNATarget
Ll_transcript_391571; TRINITY_DN46466_c2_g2_i2 423 443 AGGAATGCAGAGGCTTGTCGA BLAST psRNATarget
Ll_transcript_414243; TRINITY_DN49658_c0_g1_i11 2151 2171 AGGAATGTAGAGGCTTATTGA BLAST psRNATarget
Ll_transcript_309318; TRINITY_DN47128_c2_g1_i14 361 381 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_286414; TRINITY_DN48845_c8_g1_i1 350 370 CTGGAGGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_309323; TRINITY_DN47128_c2_g1_i18 361 381 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_309306; TRINITY_DN47128_c2_g1_i4 361 381 CTGGAAGCAGCGGTTTATCGA BLAST psRNATarget
Ll_transcript_342748; TRINITY_DN49868_c4_g1_i6 2145 2165 CAGGAAGCAAAGGCTTATTGA BLAST psRNATarget
Ll_transcript_342754; TRINITY_DN49868_c4_g1_i8 2378 2398 CAGGAAGCAAAGGCTTATTGA BLAST psRNATarget
Ll_transcript_452437; TRINITY_DN43294_c0_g1_i1 798 818 GAGGATGGAGAGGCTTACTGA BLAST psRNATarget
Ll_transcript_371191; TRINITY_DN47079_c3_g3_i6 3902 3923 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_371184; TRINITY_DN47079_c3_g3_i5 3902 3923 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_371155; TRINITY_DN47079_c3_g3_i2 3902 3923 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_371153; TRINITY_DN47079_c3_g3_i1 3902 3923 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_371169; TRINITY_DN47079_c3_g3_i4 3902 3923 CTGGATGCAGAGGTGTTATCGA BLAST psRNATarget
Ll_transcript_326074; TRINITY_DN48010_c4_g1_i3 1571 1591 ATGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_326073; TRINITY_DN48010_c4_g1_i2 1571 1591 ATGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_326076; TRINITY_DN48010_c4_g1_i5 1968 1988 ATGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_326075; TRINITY_DN48010_c4_g1_i4 1968 1988 ATGGATGCAGGGGTTTATCAT BLAST psRNATarget
Ll_transcript_531146; TRINITY_DN50062_c3_g1_i3 624 644 AAAGATGCAGAGGCTTATCCG BLAST psRNATarget
Ll_transcript_531148; TRINITY_DN50062_c3_g1_i5 624 644 AAAGATGCAGAGGCTTATCCG BLAST psRNATarget
Ll_transcript_334673; TRINITY_DN44292_c0_g1_i5 406 426 TGATATGCAGAGGCTTGTTGG BLAST psRNATarget
Ll_transcript_334674; TRINITY_DN44292_c0_g1_i6 406 426 TGATATGCAGAGGCTTGTTGG BLAST psRNATarget
Ll_transcript_334669; TRINITY_DN44292_c0_g1_i2 406 426 TGATATGCAGAGGCTTGTTGG BLAST psRNATarget
Ll_transcript_334675; TRINITY_DN44292_c0_g1_i7 406 426 TGATATGCAGAGGCTTGTTGG BLAST psRNATarget
Ll_transcript_334671; TRINITY_DN44292_c0_g1_i4 406 426 TGATATGCAGAGGCTTGTTGG BLAST psRNATarget
Ll_transcript_424080; TRINITY_DN47901_c0_g1_i1 47 67 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_454687; TRINITY_DN49775_c1_g3_i2 172 192 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_344387; TRINITY_DN50455_c2_g8_i2 275 295 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_344397; TRINITY_DN50455_c2_g8_i4 325 345 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_424082; TRINITY_DN47901_c0_g1_i3 47 67 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_454686; TRINITY_DN49775_c1_g3_i1 172 192 GAGGATGCAGATGTTTATGGA BLAST psRNATarget
Ll_transcript_342756; TRINITY_DN49868_c4_g1_i9 902 922 CCGGAAGCAAAGGCTTGTTGA BLAST psRNATarget
Ll_transcript_342736; TRINITY_DN49868_c4_g1_i1 985 1005 CCGGAAGCAAAGGCTTGTTGA BLAST psRNATarget

Expression of miRNA 242


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)