miRNA 248 details

Id Micro248
SequenceTCGCTTGGTGCAGGTCGGGAC 
Annotated namesbra-miR168b-5p; bra-miR168c-5p; nta-miR168a; nta-miR168b; nta-miR168c; sly-miR168a-5p; sly-miR168b-5p; 
Annotated pre-miRNANone

Targets of miRNA 248

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_224758; FTRINITY_DN56194_c3_g9_i1 120 140 TTCCCGACCTGCACCAAGCGA BLAST psRNATarget
Ll_transcript_108863; FTRINITY_DN50712_c0_g1_i3 726 746 TTCTGGATCTGTACCAAGCGA BLAST psRNATarget
Ll_transcript_108860; FTRINITY_DN50712_c0_g1_i1 726 746 TTCTGGATCTGTACCAAGCGA BLAST psRNATarget
Ll_transcript_108866; FTRINITY_DN50712_c0_g1_i6 726 746 TTCTGGATCTGTACCAAGCGA BLAST psRNATarget
Ll_transcript_108861; FTRINITY_DN50712_c0_g1_i2 726 746 TTCTGGATCTGTACCAAGCGA BLAST psRNATarget
Ll_transcript_133026; FTRINITY_DN57565_c2_g2_i1 645 665 CTCACGAGCTGCACCAGGCGA BLAST psRNATarget
Ll_transcript_261489; FTRINITY_DN51273_c0_g1_i4 201 221 ACCCCGAGCTGCACCAAGCAA BLAST psRNATarget
Ll_transcript_261488; FTRINITY_DN51273_c0_g1_i3 626 646 ACCCCGAGCTGCACCAAGCAA BLAST psRNATarget
Ll_transcript_261486; FTRINITY_DN51273_c0_g1_i2 629 649 ACCCCGAGCTGCACCAAGCAA BLAST psRNATarget
Ll_transcript_261484; FTRINITY_DN51273_c0_g1_i1 677 697 ACCCCGAGCTGCACCAAGCAA BLAST psRNATarget
Ll_transcript_261491; FTRINITY_DN51273_c0_g3_i2 571 591 ACCCCGAGCTGCACCAAGCAA BLAST psRNATarget
Ll_transcript_261487; FTRINITY_DN51273_c0_g3_i1 595 615 ACCCCGAGCTGCACCAAGCAA BLAST psRNATarget
Ll_transcript_129521; FTRINITY_DN53468_c4_g1_i14 789 809 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_129499; FTRINITY_DN53468_c4_g1_i3 1200 1220 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_129522; FTRINITY_DN53468_c4_g1_i15 2523 2543 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_129505; FTRINITY_DN53468_c4_g1_i6 2749 2769 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_129518; FTRINITY_DN53468_c4_g1_i13 2934 2954 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_129500; FTRINITY_DN53468_c4_g1_i4 3543 3563 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_129501; FTRINITY_DN53468_c4_g1_i5 3673 3693 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_129498; FTRINITY_DN53468_c4_g1_i2 3899 3919 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_129506; FTRINITY_DN53468_c4_g1_i7 3954 3974 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_129497; FTRINITY_DN53468_c4_g1_i1 4084 4104 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_129510; FTRINITY_DN53468_c4_g1_i9 4693 4713 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_129513; FTRINITY_DN53468_c4_g1_i11 4919 4939 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_129509; FTRINITY_DN53468_c4_g1_i8 5104 5124 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_172982; FTRINITY_DN57036_c0_g1_i10 1655 1675 GTCTTGACTTGCACCAGGTGG BLAST psRNATarget
Ll_transcript_172985; FTRINITY_DN57036_c0_g1_i13 1708 1728 GTCTTGACTTGCACCAGGTGG BLAST psRNATarget
Ll_transcript_172994; FTRINITY_DN57036_c0_g1_i21 1798 1818 GTCTTGACTTGCACCAGGTGG BLAST psRNATarget
Ll_transcript_172990; FTRINITY_DN57036_c0_g1_i18 1851 1871 GTCTTGACTTGCACCAGGTGG BLAST psRNATarget
Ll_transcript_172983; FTRINITY_DN57036_c0_g1_i11 1920 1940 GTCTTGACTTGCACCAGGTGG BLAST psRNATarget
Ll_transcript_135351; FTRINITY_DN58024_c0_g1_i4 1433 1453 AACTCGATCTGCGTCAGGTGA BLAST psRNATarget
Ll_transcript_135357; FTRINITY_DN58024_c0_g1_i8 1433 1453 AACTCGATCTGCGTCAGGTGA BLAST psRNATarget
Ll_transcript_135366; FTRINITY_DN58024_c0_g1_i16 1433 1453 AACTCGATCTGCGTCAGGTGA BLAST psRNATarget
Ll_transcript_135349; FTRINITY_DN58024_c0_g1_i2 1433 1453 AACTCGATCTGCGTCAGGTGA BLAST psRNATarget
Ll_transcript_135365; FTRINITY_DN58024_c0_g1_i15 1433 1453 AACTCGATCTGCGTCAGGTGA BLAST psRNATarget
Ll_transcript_205114; FTRINITY_DN56951_c2_g2_i9 501 521 AGTCTGATCTGCACCAAGTCA BLAST psRNATarget
Ll_transcript_205113; FTRINITY_DN56951_c2_g2_i8 501 521 AGTCTGATCTGCACCAAGTCA BLAST psRNATarget
Ll_transcript_205111; FTRINITY_DN56951_c2_g2_i6 501 521 AGTCTGATCTGCACCAAGTCA BLAST psRNATarget
Ll_transcript_452213; TRINITY_DN43238_c0_g1_i5 716 736 TTCTGGATCTGTACCAAGCGA BLAST psRNATarget
Ll_transcript_452210; TRINITY_DN43238_c0_g1_i2 716 736 TTCTGGATCTGTACCAAGCGA BLAST psRNATarget
Ll_transcript_452211; TRINITY_DN43238_c0_g1_i3 716 736 TTCTGGATCTGTACCAAGCGA BLAST psRNATarget
Ll_transcript_352173; TRINITY_DN43899_c0_g3_i1 650 670 CTCACGAGCTGCACCAGGCGA BLAST psRNATarget
Ll_transcript_317376; TRINITY_DN44834_c0_g2_i1 670 690 ACCCCGAGCTGCACCAAGCAA BLAST psRNATarget
Ll_transcript_317377; TRINITY_DN44834_c0_g1_i2 546 566 ACCCCGAGCTGCACCAAGCAA BLAST psRNATarget
Ll_transcript_317375; TRINITY_DN44834_c0_g1_i1 577 597 ACCCCGAGCTGCACCAAGCAA BLAST psRNATarget
Ll_transcript_360323; TRINITY_DN47600_c1_g1_i10 2487 2507 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_360307; TRINITY_DN47600_c1_g1_i7 2500 2520 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_360306; TRINITY_DN47600_c1_g1_i6 3249 3269 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_360296; TRINITY_DN47600_c1_g1_i3 3262 3282 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_360304; TRINITY_DN47600_c1_g1_i5 3650 3670 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_360322; TRINITY_DN47600_c1_g1_i9 4412 4432 AACCAGATTTGCACCAAGTGA BLAST psRNATarget
Ll_transcript_388853; TRINITY_DN50958_c0_g1_i15 1366 1386 AACTCGATCTGCGTCAGGTGA BLAST psRNATarget
Ll_transcript_388840; TRINITY_DN50958_c0_g1_i2 1366 1386 AACTCGATCTGCGTCAGGTGA BLAST psRNATarget
Ll_transcript_388839; TRINITY_DN50958_c0_g1_i1 1401 1421 AACTCGATCTGCGTCAGGTGA BLAST psRNATarget
Ll_transcript_388841; TRINITY_DN50958_c0_g1_i3 1366 1386 AACTCGATCTGCGTCAGGTGA BLAST psRNATarget
Ll_transcript_388849; TRINITY_DN50958_c0_g1_i11 1366 1386 AACTCGATCTGCGTCAGGTGA BLAST psRNATarget
Ll_transcript_452019; TRINITY_DN40790_c0_g1_i1 105 125 CCCCTGGTCTGAACCAAGCGG BLAST psRNATarget
Ll_transcript_520537; TRINITY_DN46539_c2_g5_i1 190 210 AGCTTGACCTGCATTAAGCCA BLAST psRNATarget
Ll_transcript_485798; TRINITY_DN52364_c0_g1_i11 517 537 AGTCTGATCTGCACCAAGTCA BLAST psRNATarget
Ll_transcript_485801; TRINITY_DN52364_c0_g1_i13 563 583 AGTCTGATCTGCACCAAGTCA BLAST psRNATarget
Ll_transcript_485791; TRINITY_DN52364_c0_g1_i6 578 598 AGTCTGATCTGCACCAAGTCA BLAST psRNATarget
Ll_transcript_485794; TRINITY_DN52364_c0_g1_i9 578 598 AGTCTGATCTGCACCAAGTCA BLAST psRNATarget
Ll_transcript_485806; TRINITY_DN52364_c0_g1_i18 578 598 AGTCTGATCTGCACCAAGTCA BLAST psRNATarget
Ll_transcript_485787; TRINITY_DN52364_c0_g1_i2 578 598 AGTCTGATCTGCACCAAGTCA BLAST psRNATarget
Ll_transcript_485793; TRINITY_DN52364_c0_g1_i8 578 598 AGTCTGATCTGCACCAAGTCA BLAST psRNATarget

Expression of miRNA 248


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)