miRNA 309 details

Id Micro309
SequenceTGACTGAGCCGTGCCAATATC 
Annotated nameszma-miR171c-3p; 
Annotated pre-miRNANone

Targets of miRNA 309

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_29004; FTRINITY_DN52221_c5_g1_i3 1311 1331 GATATTGGCGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_29008; FTRINITY_DN52221_c5_g1_i5 1410 1430 GATATTGGCGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_29010; FTRINITY_DN52221_c5_g1_i6 1311 1331 GATATTGGCGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_29005; FTRINITY_DN52221_c5_g1_i4 1593 1613 GATATTGGCGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_28999; FTRINITY_DN52221_c5_g1_i1 1410 1430 GATATTGGCGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_29000; FTRINITY_DN52221_c5_g1_i2 1593 1613 GATATTGGCGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_29011; FTRINITY_DN52221_c5_g6_i1 1805 1825 GATATTGGCGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_215646; FTRINITY_DN57799_c0_g1_i3 204 224 GATATTGGTACGGTTCAATCA BLAST psRNATarget
Ll_transcript_215644; FTRINITY_DN57799_c0_g1_i1 204 224 GATATTGGTACGGTTCAATCA BLAST psRNATarget
Ll_transcript_118119; FTRINITY_DN45955_c0_g2_i1 42 62 AATATTGCCACGGTTGAGTCA BLAST psRNATarget
Ll_transcript_1288; FTRINITY_DN54604_c6_g1_i1 180 200 ATTATTGGTACAGTTTAGTCA BLAST psRNATarget
Ll_transcript_85409; FTRINITY_DN56640_c5_g1_i1 736 756 GATATTGGAGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_172670; FTRINITY_DN57030_c0_g2_i6 506 526 TAAATTGGAACGGCTCAGTCC BLAST psRNATarget
Ll_transcript_172679; FTRINITY_DN57030_c0_g2_i11 99 119 TAAATTGGAACGGCTCAGTCC BLAST psRNATarget
Ll_transcript_172680; FTRINITY_DN57030_c0_g2_i12 506 526 TAAATTGGAACGGCTCAGTCC BLAST psRNATarget
Ll_transcript_172665; FTRINITY_DN57030_c0_g2_i3 99 119 TAAATTGGAACGGCTCAGTCC BLAST psRNATarget
Ll_transcript_172657; FTRINITY_DN57030_c0_g2_i1 506 526 TAAATTGGAACGGCTCAGTCC BLAST psRNATarget
Ll_transcript_172687; FTRINITY_DN57030_c0_g2_i15 506 526 TAAATTGGAACGGCTCAGTCC BLAST psRNATarget
Ll_transcript_172685; FTRINITY_DN57030_c0_g2_i14 506 526 TAAATTGGAACGGCTCAGTCC BLAST psRNATarget
Ll_transcript_172667; FTRINITY_DN57030_c0_g2_i4 506 526 TAAATTGGAACGGCTCAGTCC BLAST psRNATarget
Ll_transcript_120730; FTRINITY_DN58235_c0_g8_i1 67 87 TTTATTGGCATGCCTCAGTGA BLAST psRNATarget
Ll_transcript_214953; FTRINITY_DN57727_c5_g2_i5 1195 1215 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_215360; FTRINITY_DN57733_c0_g1_i5 1550 1570 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_215368; FTRINITY_DN57733_c0_g1_i12 1855 1875 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_215366; FTRINITY_DN57733_c0_g1_i11 2233 2253 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_214966; FTRINITY_DN57727_c5_g2_i12 1195 1215 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_214959; FTRINITY_DN57727_c5_g2_i8 1195 1215 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_214957; FTRINITY_DN57727_c5_g2_i7 1195 1215 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_214949; FTRINITY_DN57727_c5_g2_i2 1195 1215 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_214962; FTRINITY_DN57727_c5_g2_i10 1195 1215 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_214960; FTRINITY_DN57727_c5_g2_i9 1195 1215 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_214968; FTRINITY_DN57727_c5_g2_i13 1195 1215 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_214969; FTRINITY_DN57727_c5_g2_i14 1195 1215 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_214954; FTRINITY_DN57727_c5_g2_i6 1195 1215 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_214970; FTRINITY_DN57727_c5_g2_i15 1195 1215 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_214952; FTRINITY_DN57727_c5_g2_i4 1195 1215 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_214963; FTRINITY_DN57727_c5_g2_i11 1195 1215 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_227528; FTRINITY_DN56135_c0_g2_i2 415 435 ATTAATGGCATGGCTTGGTCC BLAST psRNATarget
Ll_transcript_75449; FTRINITY_DN55591_c2_g5_i3 1078 1098 ACTATTTGCTTGGCTCGGTCA BLAST psRNATarget
Ll_transcript_75457; FTRINITY_DN55591_c2_g5_i7 1113 1133 ACTATTTGCTTGGCTCGGTCA BLAST psRNATarget
Ll_transcript_75448; FTRINITY_DN55591_c2_g5_i2 1146 1166 ACTATTTGCTTGGCTCGGTCA BLAST psRNATarget
Ll_transcript_75446; FTRINITY_DN55591_c2_g5_i1 1265 1285 ACTATTTGCTTGGCTCGGTCA BLAST psRNATarget
Ll_transcript_51581; FTRINITY_DN58853_c0_g1_i1 538 558 TTTCTTGGCATTGTTCAGTCA BLAST psRNATarget
Ll_transcript_348613; TRINITY_DN52460_c2_g5_i3 1421 1441 GATATTGGCGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_348610; TRINITY_DN52460_c2_g5_i1 1604 1624 GATATTGGCGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_348611; TRINITY_DN52460_c2_g5_i2 1421 1441 GATATTGGCGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_348628; TRINITY_DN52460_c2_g5_i5 1604 1624 GATATTGGCGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_348624; TRINITY_DN52460_c2_g5_i4 1699 1719 GATATTGGCGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_361779; TRINITY_DN48462_c6_g1_i2 320 340 GATATTGGTACGGTTCAATCA BLAST psRNATarget
Ll_transcript_361778; TRINITY_DN48462_c6_g1_i1 320 340 GATATTGGTACGGTTCAATCA BLAST psRNATarget
Ll_transcript_414162; TRINITY_DN49673_c1_g1_i1 180 200 GATGTTAGCATGGTTCAGTTA BLAST psRNATarget
Ll_transcript_286071; TRINITY_DN48850_c2_g1_i1 1846 1866 ATTATTGGTACAGTTTAGTCA BLAST psRNATarget
Ll_transcript_361595; TRINITY_DN7864_c0_g1_i1 904 924 GATATTGGAGCGGCTCAATCA BLAST psRNATarget
Ll_transcript_305834; TRINITY_DN52279_c2_g1_i22 1072 1092 TAAATTGGAACGGCTCAGTCC BLAST psRNATarget
Ll_transcript_305824; TRINITY_DN52279_c2_g1_i13 1111 1131 TAAATTGGAACGGCTCAGTCC BLAST psRNATarget
Ll_transcript_351010; TRINITY_DN52408_c1_g3_i3 96 116 TTTATTGGCATGGCTCTCTCA BLAST psRNATarget
Ll_transcript_351009; TRINITY_DN52408_c1_g3_i2 96 116 TTTATTGGCATGGCTCTCTCA BLAST psRNATarget
Ll_transcript_351015; TRINITY_DN52408_c1_g3_i5 96 116 TTTATTGGCATGGCTCTCTCA BLAST psRNATarget
Ll_transcript_351003; TRINITY_DN52408_c1_g3_i1 96 116 TTTATTGGCATGGCTCTCTCA BLAST psRNATarget
Ll_transcript_351014; TRINITY_DN52408_c1_g3_i4 96 116 TTTATTGGCATGGCTCTCTCA BLAST psRNATarget
Ll_transcript_430468; TRINITY_DN52168_c0_g1_i8 595 615 TTTATTGGCATGCCTCAGTGA BLAST psRNATarget
Ll_transcript_498175; TRINITY_DN50278_c1_g1_i6 1463 1483 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_283182; TRINITY_DN46154_c5_g3_i13 1211 1231 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_498178; TRINITY_DN50278_c1_g1_i9 1562 1582 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_498194; TRINITY_DN50278_c1_g1_i25 1768 1788 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_498184; TRINITY_DN50278_c1_g1_i15 1796 1816 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_498203; TRINITY_DN50278_c1_g1_i34 1817 1837 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_498177; TRINITY_DN50278_c1_g1_i8 1867 1887 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_498197; TRINITY_DN50278_c1_g1_i28 2101 2121 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_498201; TRINITY_DN50278_c1_g1_i32 2267 2287 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_498179; TRINITY_DN50278_c1_g1_i10 2316 2336 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_498207; TRINITY_DN50278_c1_g1_i37 2366 2386 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_498181; TRINITY_DN50278_c1_g1_i12 2600 2620 TTTATTGGTGCAGCTTAGTTA BLAST psRNATarget
Ll_transcript_283186; TRINITY_DN46154_c5_g3_i14 1211 1231 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_283171; TRINITY_DN46154_c5_g3_i9 1211 1231 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_283162; TRINITY_DN46154_c5_g3_i6 1211 1231 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_283175; TRINITY_DN46154_c5_g3_i10 1211 1231 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_283170; TRINITY_DN46154_c5_g3_i8 1211 1231 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_283139; TRINITY_DN46154_c5_g3_i1 1211 1231 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_283143; TRINITY_DN46154_c5_g3_i3 1211 1231 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_283180; TRINITY_DN46154_c5_g3_i12 1211 1231 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_283152; TRINITY_DN46154_c5_g3_i4 1211 1231 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_283189; TRINITY_DN46154_c5_g3_i16 1211 1231 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_283164; TRINITY_DN46154_c5_g3_i7 1211 1231 AGTAATGGTATGGTTCAGTCT BLAST psRNATarget
Ll_transcript_507679; TRINITY_DN52565_c1_g2_i1 304 324 ATTAATGGCATGGCTTGGTCC BLAST psRNATarget
Ll_transcript_507696; TRINITY_DN52565_c1_g2_i8 358 378 ATTAATGGCATGGCTTGGTCC BLAST psRNATarget
Ll_transcript_352622; TRINITY_DN15446_c0_g1_i1 604 624 TTTCTTGGCATTGTTCAGTCA BLAST psRNATarget
Ll_transcript_319320; TRINITY_DN46206_c1_g6_i2 1110 1130 ACTATTTGCTTGGCTCGGTCA BLAST psRNATarget
Ll_transcript_319317; TRINITY_DN46206_c1_g6_i1 1262 1282 ACTATTTGCTTGGCTCGGTCA BLAST psRNATarget

Expression of miRNA 309


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)