miRNA 335 details

Id Micro335
SequenceTGCTCACCTCTCTTTCTGTCAGT 
Annotated namesath-miR156b-3p; bra-miR156e-3p; 
Annotated pre-miRNANone

Targets of miRNA 335

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_180385; FTRINITY_DN53592_c3_g5_i1 1902 1924 GATTACAGAAAGAGGGGTGGGTA BLAST psRNATarget
Ll_transcript_156479; FTRINITY_DN56555_c0_g1_i9 175 197 TCCGACAAAGAGAGAGGTGAGTG BLAST psRNATarget
Ll_transcript_156471; FTRINITY_DN56555_c0_g1_i2 1012 1034 TCCGACAAAGAGAGAGGTGAGTG BLAST psRNATarget
Ll_transcript_156472; FTRINITY_DN56555_c0_g1_i3 1012 1034 TCCGACAAAGAGAGAGGTGAGTG BLAST psRNATarget
Ll_transcript_156491; FTRINITY_DN56555_c0_g1_i20 1012 1034 TCCGACAAAGAGAGAGGTGAGTG BLAST psRNATarget
Ll_transcript_156486; FTRINITY_DN56555_c0_g1_i16 1012 1034 TCCGACAAAGAGAGAGGTGAGTG BLAST psRNATarget
Ll_transcript_156485; FTRINITY_DN56555_c0_g1_i15 1012 1034 TCCGACAAAGAGAGAGGTGAGTG BLAST psRNATarget
Ll_transcript_156490; FTRINITY_DN56555_c0_g1_i19 1146 1168 TCCGACAAAGAGAGAGGTGAGTG BLAST psRNATarget
Ll_transcript_190207; FTRINITY_DN56789_c0_g2_i1 145 167 ATCAGCAGAAGGAGAGGTGAGAA BLAST psRNATarget
Ll_transcript_79910; FTRINITY_DN58165_c2_g1_i12 348 370 CCATGCAGATAGAGAGGTGAGCT BLAST psRNATarget
Ll_transcript_79908; FTRINITY_DN58165_c2_g1_i10 348 370 CCATGCAGATAGAGAGGTGAGCT BLAST psRNATarget
Ll_transcript_79919; FTRINITY_DN58165_c2_g1_i19 348 370 CCATGCAGATAGAGAGGTGAGCT BLAST psRNATarget
Ll_transcript_72489; FTRINITY_DN56008_c5_g1_i2 958 980 CTTGACAGGAAGACAGGTGAGCC BLAST psRNATarget
Ll_transcript_72494; FTRINITY_DN56008_c5_g1_i6 1049 1071 CTTGACAGGAAGACAGGTGAGCC BLAST psRNATarget
Ll_transcript_72491; FTRINITY_DN56008_c5_g1_i4 958 980 CTTGACAGGAAGACAGGTGAGCC BLAST psRNATarget
Ll_transcript_72490; FTRINITY_DN56008_c5_g1_i3 958 980 CTTGACAGGAAGACAGGTGAGCC BLAST psRNATarget
Ll_transcript_72495; FTRINITY_DN56008_c5_g1_i7 1049 1071 CTTGACAGGAAGACAGGTGAGCC BLAST psRNATarget
Ll_transcript_267591; FTRINITY_DN55858_c1_g1_i12 1574 1596 AGTGAGAGAAAGAGGGGTGAGGA BLAST psRNATarget
Ll_transcript_267588; FTRINITY_DN55858_c1_g1_i10 1686 1708 AGTGAGAGAAAGAGGGGTGAGGA BLAST psRNATarget
Ll_transcript_267592; FTRINITY_DN55858_c1_g1_i13 1714 1736 AGTGAGAGAAAGAGGGGTGAGGA BLAST psRNATarget
Ll_transcript_267586; FTRINITY_DN55858_c1_g1_i8 1831 1853 AGTGAGAGAAAGAGGGGTGAGGA BLAST psRNATarget
Ll_transcript_47923; FTRINITY_DN79177_c0_g1_i1 367 389 CATGGCATAAGGGGGGGTGAGTA BLAST psRNATarget
Ll_transcript_130620; FTRINITY_DN57596_c0_g1_i1 16 38 CGTGAAAAAAAGGGAGGTGAGCC BLAST psRNATarget
Ll_transcript_96922; FTRINITY_DN44399_c0_g1_i2 264 286 ATGGAAAGAAAGAGAGATGAGTG BLAST psRNATarget
Ll_transcript_96921; FTRINITY_DN44399_c0_g1_i1 288 310 ATGGAAAGAAAGAGAGATGAGTG BLAST psRNATarget
Ll_transcript_246841; FTRINITY_DN53310_c7_g1_i4 133 155 ATTTAGAGGGAGAGAGGTGAGAA BLAST psRNATarget
Ll_transcript_246842; FTRINITY_DN53310_c7_g1_i5 133 155 ATTTAGAGGGAGAGAGGTGAGAA BLAST psRNATarget
Ll_transcript_246846; FTRINITY_DN53310_c7_g1_i9 336 358 ATTTAGAGGGAGAGAGGTGAGAA BLAST psRNATarget
Ll_transcript_246843; FTRINITY_DN53310_c7_g1_i6 336 358 ATTTAGAGGGAGAGAGGTGAGAA BLAST psRNATarget
Ll_transcript_155850; FTRINITY_DN56506_c0_g1_i1 1109 1131 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_155856; FTRINITY_DN56506_c0_g1_i4 1136 1158 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_155851; FTRINITY_DN56506_c0_g1_i2 1155 1177 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_155854; FTRINITY_DN56506_c0_g1_i3 1241 1263 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_109855; FTRINITY_DN55476_c0_g1_i4 575 597 AACGACAGAAGGAAAGGCGAGCA BLAST psRNATarget
Ll_transcript_246837; FTRINITY_DN53310_c7_g1_i1 133 155 ATTTAGAGGGAGAGAGGTGAGAA BLAST psRNATarget
Ll_transcript_246847; FTRINITY_DN53310_c7_g1_i10 336 358 ATTTAGAGGGAGAGAGGTGAGAA BLAST psRNATarget
Ll_transcript_91109; FTRINITY_DN53917_c7_g4_i9 87 109 CCAGAGAGAAGGGGAGGTGAGAA BLAST psRNATarget
Ll_transcript_203055; FTRINITY_DN56983_c0_g3_i1 48 70 ACACACAGAGAGAGAGGTAGGTG BLAST psRNATarget
Ll_transcript_184464; FTRINITY_DN57483_c1_g3_i1 46 68 AGAGAGAGAAAGATGGGTGAGTA BLAST psRNATarget
Ll_transcript_315843; TRINITY_DN46747_c1_g6_i1 1911 1933 GATTACAGAAAGAGGGGTGGGTA BLAST psRNATarget
Ll_transcript_343897; TRINITY_DN49876_c1_g1_i12 291 313 TCCGACAAAGAGAGAGGTGAGTG BLAST psRNATarget
Ll_transcript_343895; TRINITY_DN49876_c1_g1_i10 291 313 TCCGACAAAGAGAGAGGTGAGTG BLAST psRNATarget
Ll_transcript_343905; TRINITY_DN49876_c1_g1_i18 754 776 TCCGACAAAGAGAGAGGTGAGTG BLAST psRNATarget
Ll_transcript_343902; TRINITY_DN49876_c1_g1_i16 992 1014 TCCGACAAAGAGAGAGGTGAGTG BLAST psRNATarget
Ll_transcript_529993; TRINITY_DN51080_c0_g2_i1 619 641 CCATGCAGATAGAGAGGTGAGCT BLAST psRNATarget
Ll_transcript_529994; TRINITY_DN51080_c0_g2_i2 1605 1627 CCATGCAGATAGAGAGGTGAGCT BLAST psRNATarget
Ll_transcript_530007; TRINITY_DN51080_c0_g2_i11 1605 1627 CCATGCAGATAGAGAGGTGAGCT BLAST psRNATarget
Ll_transcript_411247; TRINITY_DN44987_c0_g1_i4 952 974 CTTGACAGGAAGACAGGTGAGCC BLAST psRNATarget
Ll_transcript_411245; TRINITY_DN44987_c0_g1_i2 952 974 CTTGACAGGAAGACAGGTGAGCC BLAST psRNATarget
Ll_transcript_469598; TRINITY_DN45460_c1_g1_i3 987 1009 AGTGAGAGAAAGAGGGGTGAGGA BLAST psRNATarget
Ll_transcript_469596; TRINITY_DN45460_c1_g1_i1 1244 1266 AGTGAGAGAAAGAGGGGTGAGGA BLAST psRNATarget
Ll_transcript_317650; TRINITY_DN20064_c0_g1_i1 247 269 ACTAACAGAGGGAGAGGTGGTTA BLAST psRNATarget
Ll_transcript_312043; TRINITY_DN46936_c4_g1_i1 81 103 ATTTGCAGAAAGAGAGGGAAGCA BLAST psRNATarget
Ll_transcript_322152; TRINITY_DN62013_c0_g1_i1 404 426 CATGGCATAAGGGGGGGTGAGTA BLAST psRNATarget
Ll_transcript_495107; TRINITY_DN77103_c0_g1_i1 140 162 ATGGAAAGAAAGAGAGATGAGTG BLAST psRNATarget
Ll_transcript_331237; TRINITY_DN49037_c1_g3_i2 248 270 ATTTAGAGGGAGAGAGGTGAGAA BLAST psRNATarget
Ll_transcript_331260; TRINITY_DN49037_c1_g3_i7 248 270 ATTTAGAGGGAGAGAGGTGAGAA BLAST psRNATarget
Ll_transcript_331239; TRINITY_DN49037_c1_g3_i3 248 270 ATTTAGAGGGAGAGAGGTGAGAA BLAST psRNATarget
Ll_transcript_331245; TRINITY_DN49037_c1_g3_i4 451 473 ATTTAGAGGGAGAGAGGTGAGAA BLAST psRNATarget
Ll_transcript_331225; TRINITY_DN49037_c1_g3_i1 451 473 ATTTAGAGGGAGAGAGGTGAGAA BLAST psRNATarget
Ll_transcript_331246; TRINITY_DN49037_c1_g3_i5 451 473 ATTTAGAGGGAGAGAGGTGAGAA BLAST psRNATarget
Ll_transcript_525216; TRINITY_DN47511_c0_g1_i3 576 598 AACGACAGAAGGAAAGGCGAGCA BLAST psRNATarget
Ll_transcript_279228; TRINITY_DN50150_c0_g1_i14 1136 1158 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_279230; TRINITY_DN50150_c0_g1_i15 1155 1177 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_525219; TRINITY_DN47511_c0_g1_i5 576 598 AACGACAGAAGGAAAGGCGAGCA BLAST psRNATarget
Ll_transcript_279205; TRINITY_DN50150_c0_g1_i1 1136 1158 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_279222; TRINITY_DN50150_c0_g1_i10 1155 1177 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_502605; TRINITY_DN77369_c0_g1_i1 201 223 CCAGAGAGAAGGGGAGGTGAGAA BLAST psRNATarget
Ll_transcript_279209; TRINITY_DN50150_c0_g1_i3 1109 1131 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_279231; TRINITY_DN50150_c0_g1_i16 1241 1263 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_279210; TRINITY_DN50150_c0_g1_i4 1109 1131 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_279226; TRINITY_DN50150_c0_g1_i13 1136 1158 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_279217; TRINITY_DN50150_c0_g1_i6 1155 1177 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_279224; TRINITY_DN50150_c0_g1_i11 1241 1263 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_279220; TRINITY_DN50150_c0_g1_i8 1136 1158 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget
Ll_transcript_279212; TRINITY_DN50150_c0_g1_i5 1155 1177 ATGGACGGTAAGGGTGGTGAGCA BLAST psRNATarget

Expression of miRNA 335


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)