miRNA 342 details

Id Micro342
SequenceTGGACTGAAGGGGAGCTCCTTC 
Annotated namesgma-miR319d; gma-miR319o; 
Annotated pre-miRNANone

Targets of miRNA 342

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_252434; FTRINITY_DN52581_c3_g4_i2 79 100 CAAGGAGTTTCTCTTCAGTCAA BLAST psRNATarget
Ll_transcript_252433; FTRINITY_DN52581_c3_g4_i1 79 100 CAAGGAGTTTCTCTTCAGTCAA BLAST psRNATarget
Ll_transcript_252456; FTRINITY_DN52581_c3_g4_i6 79 100 CAAGGAGTTTCTCTTCAGTCAA BLAST psRNATarget
Ll_transcript_252451; FTRINITY_DN52581_c3_g4_i5 79 100 CAAGGAGTTTCTCTTCAGTCAA BLAST psRNATarget
Ll_transcript_252442; FTRINITY_DN52581_c3_g4_i3 79 100 CAAGGAGTTTCTCTTCAGTCAA BLAST psRNATarget
Ll_transcript_272438; FTRINITY_DN54234_c1_g2_i1 898 919 AGAGTAACTCTTCTTCAGTCCA BLAST psRNATarget
Ll_transcript_146716; FTRINITY_DN59018_c2_g1_i16 377 398 CCTTGGGTTCCCCTTTGGTCCA BLAST psRNATarget
Ll_transcript_103116; FTRINITY_DN54914_c0_g3_i3 993 1014 TTTGGAGTTTTCCTACAGTCCA BLAST psRNATarget
Ll_transcript_36997; FTRINITY_DN58915_c3_g1_i7 216 237 CTGGCAGTTTTCCTTTAGTCCA BLAST psRNATarget
Ll_transcript_36991; FTRINITY_DN58915_c3_g1_i2 359 380 CTGGCAGTTTTCCTTTAGTCCA BLAST psRNATarget
Ll_transcript_43126; FTRINITY_DN54129_c0_g1_i7 317 338 CACCCACCTCCCCTTCAGTCCA BLAST psRNATarget
Ll_transcript_43119; FTRINITY_DN54129_c0_g1_i2 317 338 CACCCACCTCCCCTTCAGTCCA BLAST psRNATarget
Ll_transcript_43121; FTRINITY_DN54129_c0_g1_i3 317 338 CACCCACCTCCCCTTCAGTCCA BLAST psRNATarget
Ll_transcript_43125; FTRINITY_DN54129_c0_g1_i6 317 338 CACCCACCTCCCCTTCAGTCCA BLAST psRNATarget
Ll_transcript_235773; FTRINITY_DN52861_c4_g6_i1 224 245 ATTTGTGTTCCTCTTCAGTCCA BLAST psRNATarget
Ll_transcript_98006; FTRINITY_DN46388_c0_g1_i1 801 822 GAAGGAGTTTTCTTTCAATCCA BLAST psRNATarget
Ll_transcript_33818; FTRINITY_DN58738_c1_g1_i3 1621 1642 TGAGGAGCTCCTCTTCGCTTTA BLAST psRNATarget
Ll_transcript_33833; FTRINITY_DN58738_c1_g1_i6 1694 1715 TGAGGAGCTCCTCTTCGCTTTA BLAST psRNATarget
Ll_transcript_235767; FTRINITY_DN52861_c4_g2_i1 225 246 ACCTATGCTCCTCTTCAGTCCA BLAST psRNATarget
Ll_transcript_206915; FTRINITY_DN52647_c4_g2_i7 2139 2160 CAAGTGGCCCTCCTTCAGTTCA BLAST psRNATarget
Ll_transcript_206905; FTRINITY_DN52647_c4_g2_i4 2139 2160 CAAGTGGCCCTCCTTCAGTTCA BLAST psRNATarget
Ll_transcript_206901; FTRINITY_DN52647_c4_g2_i1 2139 2160 CAAGTGGCCCTCCTTCAGTTCA BLAST psRNATarget
Ll_transcript_206911; FTRINITY_DN52647_c4_g2_i5 2139 2160 CAAGTGGCCCTCCTTCAGTTCA BLAST psRNATarget
Ll_transcript_39248; FTRINITY_DN58997_c0_g1_i3 5118 5139 ACAAGAGTTTCCCTTCAGTCTT BLAST psRNATarget
Ll_transcript_39247; FTRINITY_DN58997_c0_g1_i2 5118 5139 ACAAGAGTTTCCCTTCAGTCTT BLAST psRNATarget
Ll_transcript_182948; FTRINITY_DN83670_c0_g1_i1 766 787 GTCAGAGCTCCTCTTCGGTTCT BLAST psRNATarget
Ll_transcript_219221; FTRINITY_DN56336_c1_g1_i1 1440 1461 ACAGGAGTGCTCATTCAGTCCA BLAST psRNATarget
Ll_transcript_219228; FTRINITY_DN56336_c1_g1_i2 1695 1716 ACAGGAGTGCTCATTCAGTCCA BLAST psRNATarget
Ll_transcript_478249; TRINITY_DN44459_c0_g1_i2 77 98 CAAGGAGTTTCTCTTCAGTCAA BLAST psRNATarget
Ll_transcript_478248; TRINITY_DN44459_c0_g1_i1 77 98 CAAGGAGTTTCTCTTCAGTCAA BLAST psRNATarget
Ll_transcript_404959; TRINITY_DN32671_c0_g2_i1 152 173 AACAGAGCTATCCTTCAGTCCA BLAST psRNATarget
Ll_transcript_476496; TRINITY_DN47428_c3_g8_i2 316 337 AGAGTAACTCTTCTTCAGTCCA BLAST psRNATarget
Ll_transcript_476486; TRINITY_DN47428_c3_g8_i1 316 337 AGAGTAACTCTTCTTCAGTCCA BLAST psRNATarget
Ll_transcript_464365; TRINITY_DN52658_c2_g3_i31 1645 1666 CCTTGGGTTCCCCTTTGGTCCA BLAST psRNATarget
Ll_transcript_464364; TRINITY_DN52658_c2_g3_i30 1754 1775 CCTTGGGTTCCCCTTTGGTCCA BLAST psRNATarget
Ll_transcript_309546; TRINITY_DN47192_c0_g4_i1 1037 1058 TTTGGAGTTTTCCTACAGTCCA BLAST psRNATarget
Ll_transcript_330553; TRINITY_DN49005_c4_g6_i1 136 157 ATTTGTGTTCCTCTTCAGTCCA BLAST psRNATarget
Ll_transcript_330558; TRINITY_DN49005_c4_g6_i2 136 157 ATTTGTGTTCCTCTTCAGTCCA BLAST psRNATarget
Ll_transcript_371709; TRINITY_DN47085_c2_g1_i1 317 338 CACCCACCTCCCCTTCAGTCCA BLAST psRNATarget
Ll_transcript_371714; TRINITY_DN47085_c2_g1_i2 317 338 CACCCACCTCCCCTTCAGTCCA BLAST psRNATarget
Ll_transcript_321531; TRINITY_DN43426_c0_g1_i1 960 981 GAAGGAGTTTTCTTTCAATCCA BLAST psRNATarget
Ll_transcript_377926; TRINITY_DN50723_c0_g2_i7 1611 1632 TGAGGAGCTCCTCTTCGCTTTA BLAST psRNATarget
Ll_transcript_377924; TRINITY_DN50723_c0_g2_i5 1684 1705 TGAGGAGCTCCTCTTCGCTTTA BLAST psRNATarget
Ll_transcript_377928; TRINITY_DN50723_c0_g2_i9 1828 1849 TGAGGAGCTCCTCTTCGCTTTA BLAST psRNATarget
Ll_transcript_392826; TRINITY_DN45974_c2_g11_i1 227 248 ACCTATGCTCCTCTTCAGTCCA BLAST psRNATarget
Ll_transcript_490118; TRINITY_DN50326_c3_g1_i8 2141 2162 CAAGTGGCCCTCCTTCAGTTCA BLAST psRNATarget
Ll_transcript_490129; TRINITY_DN50326_c3_g1_i13 2141 2162 CAAGTGGCCCTCCTTCAGTTCA BLAST psRNATarget
Ll_transcript_504963; TRINITY_DN52594_c1_g2_i9 2541 2562 ACAAGAGTTTCCCTTCAGTCTT BLAST psRNATarget
Ll_transcript_504945; TRINITY_DN52594_c1_g2_i1 2833 2854 ACAAGAGTTTCCCTTCAGTCTT BLAST psRNATarget
Ll_transcript_321371; TRINITY_DN43473_c0_g1_i1 900 921 GTCAGAGCTCCTCTTCGGTTCT BLAST psRNATarget
Ll_transcript_348913; TRINITY_DN52483_c1_g1_i23 2305 2326 ACAGGAGTGCTCATTCAGTCCA BLAST psRNATarget
Ll_transcript_348897; TRINITY_DN52483_c1_g1_i9 2448 2469 ACAGGAGTGCTCATTCAGTCCA BLAST psRNATarget

Expression of miRNA 342


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)