miRNA 354 details

Id Micro354
SequenceTGGATTCCACTGACACGTAGACGT 
Annotated namesosa-miR5153; 
Annotated pre-miRNANone

Targets of miRNA 354

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_247240; FTRINITY_DN3107_c0_g1_i1 72 95 CTGTATAGGTGTCAGTGGAATTCG BLAST psRNATarget
Ll_transcript_172274; FTRINITY_DN57064_c0_g1_i9 1351 1374 AATGATATGTCTCAGTGGAATTCA BLAST psRNATarget
Ll_transcript_215411; FTRINITY_DN57770_c1_g1_i2 7538 7561 CTTTTTACGGGTCAGTGGAATCTT BLAST psRNATarget
Ll_transcript_67733; FTRINITY_DN55041_c0_g2_i9 218 241 GTGTGTTTGTGTCAGTGGTATCCA BLAST psRNATarget
Ll_transcript_67738; FTRINITY_DN55041_c0_g2_i13 218 241 GTGTGTTTGTGTCAGTGGTATCCA BLAST psRNATarget
Ll_transcript_54161; FTRINITY_DN57283_c1_g1_i1 140 162 GTGCTTGCGTTCAGTGGAATTCA BLAST psRNATarget
Ll_transcript_192918; FTRINITY_DN55799_c0_g10_i1 145 168 AGTTTTATGTGTTGGTGGAATTTT BLAST psRNATarget
Ll_transcript_176892; FTRINITY_DN58624_c2_g1_i7 3253 3276 TCCTTTATGTTTCAGTGGAATGTA BLAST psRNATarget
Ll_transcript_92891; FTRINITY_DN54849_c1_g1_i16 230 253 GTGTATGCATTTCGGTGGAATCTA BLAST psRNATarget
Ll_transcript_198175; FTRINITY_DN74114_c0_g1_i1 180 203 TTTCCTTTGTGTTAGTGGAATCTT BLAST psRNATarget
Ll_transcript_83876; FTRINITY_DN56610_c0_g1_i10 1117 1140 AAATGTACGTGCTAATGGAATCCA BLAST psRNATarget
Ll_transcript_83868; FTRINITY_DN56610_c0_g1_i4 1186 1209 AAATGTACGTGCTAATGGAATCCA BLAST psRNATarget
Ll_transcript_83884; FTRINITY_DN56610_c0_g1_i18 1191 1214 AAATGTACGTGCTAATGGAATCCA BLAST psRNATarget
Ll_transcript_74475; FTRINITY_DN55521_c1_g3_i1 1813 1836 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_74490; FTRINITY_DN55521_c1_g3_i6 1813 1836 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_74485; FTRINITY_DN55521_c1_g3_i4 1813 1836 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_74482; FTRINITY_DN55521_c1_g3_i3 1813 1836 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_74488; FTRINITY_DN55521_c1_g3_i5 1813 1836 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_300490; TRINITY_DN51584_c4_g9_i1 257 280 CTGTATAGGTGTCAGTGGAATTCG BLAST psRNATarget
Ll_transcript_297684; TRINITY_DN37037_c0_g1_i1 601 624 AATGATATGTCTCAGTGGAATTCA BLAST psRNATarget
Ll_transcript_515035; TRINITY_DN50807_c3_g3_i11 7238 7261 CTTTTTACGGGTCAGTGGAATCTT BLAST psRNATarget
Ll_transcript_515010; TRINITY_DN50807_c3_g3_i2 7238 7261 CTTTTTACGGGTCAGTGGAATCTT BLAST psRNATarget
Ll_transcript_515033; TRINITY_DN50807_c3_g3_i9 7418 7441 CTTTTTACGGGTCAGTGGAATCTT BLAST psRNATarget
Ll_transcript_515013; TRINITY_DN50807_c3_g3_i4 7418 7441 CTTTTTACGGGTCAGTGGAATCTT BLAST psRNATarget
Ll_transcript_369987; TRINITY_DN48661_c2_g1_i2 385 408 GTGTGTTTGTGTCAGTGGTATCCA BLAST psRNATarget
Ll_transcript_369991; TRINITY_DN48661_c2_g1_i5 709 732 GTGTGTTTGTGTCAGTGGTATCCA BLAST psRNATarget
Ll_transcript_292968; TRINITY_DN49178_c1_g2_i1 146 168 GTGCTTGCGTTCAGTGGAATTCA BLAST psRNATarget
Ll_transcript_306739; TRINITY_DN52258_c1_g1_i12 247 270 TCCTTTATGTTTCAGTGGAATGTA BLAST psRNATarget
Ll_transcript_364295; TRINITY_DN48433_c2_g1_i8 891 914 GTGTATGCATTTCGGTGGAATCTA BLAST psRNATarget
Ll_transcript_417815; TRINITY_DN46065_c0_g3_i6 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_498452; TRINITY_DN50224_c1_g1_i2 600 623 AAATGTACGTGCTAATGGAATCCA BLAST psRNATarget
Ll_transcript_417818; TRINITY_DN46065_c0_g3_i8 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417808; TRINITY_DN46065_c0_g3_i4 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_498471; TRINITY_DN50224_c1_g1_i16 852 875 AAATGTACGTGCTAATGGAATCCA BLAST psRNATarget
Ll_transcript_417802; TRINITY_DN46065_c0_g3_i1 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417841; TRINITY_DN46065_c0_g3_i16 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417807; TRINITY_DN46065_c0_g3_i3 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417833; TRINITY_DN46065_c0_g3_i12 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417839; TRINITY_DN46065_c0_g3_i15 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417806; TRINITY_DN46065_c0_g3_i2 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417817; TRINITY_DN46065_c0_g3_i7 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417832; TRINITY_DN46065_c0_g3_i11 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417842; TRINITY_DN46065_c0_g3_i17 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417837; TRINITY_DN46065_c0_g3_i14 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417829; TRINITY_DN46065_c0_g3_i10 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417834; TRINITY_DN46065_c0_g3_i13 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417812; TRINITY_DN46065_c0_g3_i5 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget
Ll_transcript_417826; TRINITY_DN46065_c0_g3_i9 272 295 ATATATGAGTGTCGGTGGGGTTCA BLAST psRNATarget

Expression of miRNA 354


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)