miRNA 407 details

Id Micro407
SequenceTTGAGCCGCGCCAATATCACA 
Annotated namesppt-miR171b; 
Annotated pre-miRNANone

Targets of miRNA 407

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_29004; FTRINITY_DN52221_c5_g1_i3 1308 1328 AGGGATATTGGCGCGGCTCAA BLAST psRNATarget
Ll_transcript_29008; FTRINITY_DN52221_c5_g1_i5 1407 1427 AGGGATATTGGCGCGGCTCAA BLAST psRNATarget
Ll_transcript_29010; FTRINITY_DN52221_c5_g1_i6 1308 1328 AGGGATATTGGCGCGGCTCAA BLAST psRNATarget
Ll_transcript_29005; FTRINITY_DN52221_c5_g1_i4 1590 1610 AGGGATATTGGCGCGGCTCAA BLAST psRNATarget
Ll_transcript_28999; FTRINITY_DN52221_c5_g1_i1 1407 1427 AGGGATATTGGCGCGGCTCAA BLAST psRNATarget
Ll_transcript_29000; FTRINITY_DN52221_c5_g1_i2 1590 1610 AGGGATATTGGCGCGGCTCAA BLAST psRNATarget
Ll_transcript_29011; FTRINITY_DN52221_c5_g6_i1 1802 1822 AGGGATATTGGCGCGGCTCAA BLAST psRNATarget
Ll_transcript_85409; FTRINITY_DN56640_c5_g1_i1 733 753 TGTGATATTGGAGCGGCTCAA BLAST psRNATarget
Ll_transcript_157170; FTRINITY_DN45637_c0_g1_i1 223 243 AATGATATTGGTGGGGCTCAA BLAST psRNATarget
Ll_transcript_157171; FTRINITY_DN45637_c0_g1_i2 223 243 AATGATATTGGTGGGGCTCAA BLAST psRNATarget
Ll_transcript_205368; FTRINITY_DN56970_c1_g1_i9 1221 1241 TGTGATATTGATGCGGCTCGA BLAST psRNATarget
Ll_transcript_205350; FTRINITY_DN56970_c1_g1_i1 1235 1255 TGTGATATTGATGCGGCTCGA BLAST psRNATarget
Ll_transcript_205376; FTRINITY_DN56970_c1_g1_i13 1873 1893 TGTGATATTGATGCGGCTCGA BLAST psRNATarget
Ll_transcript_205378; FTRINITY_DN56970_c1_g1_i14 1887 1907 TGTGATATTGATGCGGCTCGA BLAST psRNATarget
Ll_transcript_205375; FTRINITY_DN56970_c1_g1_i12 1973 1993 TGTGATATTGATGCGGCTCGA BLAST psRNATarget
Ll_transcript_205362; FTRINITY_DN56970_c1_g1_i6 2403 2423 TGTGATATTGATGCGGCTCGA BLAST psRNATarget
Ll_transcript_205352; FTRINITY_DN56970_c1_g1_i2 2489 2509 TGTGATATTGATGCGGCTCGA BLAST psRNATarget
Ll_transcript_11986; FTRINITY_DN51391_c0_g2_i7 1078 1098 TCTGATGTTGGTTCGGCTCAA BLAST psRNATarget
Ll_transcript_11984; FTRINITY_DN51391_c0_g2_i5 1214 1234 TCTGATGTTGGTTCGGCTCAA BLAST psRNATarget
Ll_transcript_11980; FTRINITY_DN51391_c0_g2_i2 1237 1257 TCTGATGTTGGTTCGGCTCAA BLAST psRNATarget
Ll_transcript_11983; FTRINITY_DN51391_c0_g2_i4 1373 1393 TCTGATGTTGGTTCGGCTCAA BLAST psRNATarget
Ll_transcript_11985; FTRINITY_DN51391_c0_g2_i6 1415 1435 TCTGATGTTGGTTCGGCTCAA BLAST psRNATarget
Ll_transcript_11977; FTRINITY_DN51391_c0_g2_i1 1551 1571 TCTGATGTTGGTTCGGCTCAA BLAST psRNATarget
Ll_transcript_11981; FTRINITY_DN51391_c0_g2_i3 1574 1594 TCTGATGTTGGTTCGGCTCAA BLAST psRNATarget
Ll_transcript_196997; FTRINITY_DN54368_c0_g1_i2 281 301 AATGAGATTGGTGTGGTTCAA BLAST psRNATarget
Ll_transcript_196996; FTRINITY_DN54368_c0_g1_i1 703 723 AATGAGATTGGTGTGGTTCAA BLAST psRNATarget
Ll_transcript_156827; FTRINITY_DN68263_c0_g1_i1 292 312 GGTGGTGGTGGCGCGGCTTGA BLAST psRNATarget
Ll_transcript_86431; FTRINITY_DN83495_c0_g1_i1 315 335 TAAGGTATTGGCGCGCCTCAA BLAST psRNATarget
Ll_transcript_166913; FTRINITY_DN57362_c2_g1_i2 569 589 TTTGATATTGATGCGGCTTGA BLAST psRNATarget
Ll_transcript_148805; FTRINITY_DN57615_c5_g1_i2 717 737 TTTGAAATTGGCGTGGTTTGA BLAST psRNATarget
Ll_transcript_215646; FTRINITY_DN57799_c0_g1_i3 201 221 TGAGATATTGGTACGGTTCAA BLAST psRNATarget
Ll_transcript_215644; FTRINITY_DN57799_c0_g1_i1 201 221 TGAGATATTGGTACGGTTCAA BLAST psRNATarget
Ll_transcript_269982; FTRINITY_DN77412_c0_g1_i1 63 83 GGTGATATTGGGTTGGCTCAA BLAST psRNATarget
Ll_transcript_161477; FTRINITY_DN47926_c1_g1_i1 371 391 CGGGATATTGATGCGGTTCAA BLAST psRNATarget
Ll_transcript_62652; FTRINITY_DN75420_c0_g1_i1 205 225 TAAGGTATTGGCGTGCCTCAA BLAST psRNATarget
Ll_transcript_4736; FTRINITY_DN48827_c0_g2_i1 367 387 TTTGATATTGATGCGGCACAA BLAST psRNATarget
Ll_transcript_141726; FTRINITY_DN54022_c2_g2_i2 174 194 ATTGATGTTGGTGTGGTTTAT BLAST psRNATarget
Ll_transcript_141739; FTRINITY_DN54022_c2_g2_i5 555 575 ATTGATGTTGGTGTGGTTTAT BLAST psRNATarget
Ll_transcript_43951; FTRINITY_DN54113_c3_g1_i4 328 348 GGTGATTGTGGCGCGGCTCGT BLAST psRNATarget
Ll_transcript_43949; FTRINITY_DN54113_c3_g1_i2 1056 1076 GGTGATTGTGGCGCGGCTCGT BLAST psRNATarget
Ll_transcript_250036; FTRINITY_DN55962_c10_g3_i2 312 332 TATGATGCTGGTGTGGCTCAT BLAST psRNATarget
Ll_transcript_250033; FTRINITY_DN55962_c10_g3_i1 312 332 TATGATGCTGGTGTGGCTCAT BLAST psRNATarget
Ll_transcript_250037; FTRINITY_DN55962_c10_g3_i3 312 332 TATGATGCTGGTGTGGCTCAT BLAST psRNATarget
Ll_transcript_159094; FTRINITY_DN54727_c0_g1_i16 115 135 CATGACATTGGCGTGGCCTAA BLAST psRNATarget
Ll_transcript_203451; FTRINITY_DN56905_c1_g4_i1 115 135 CATGACATTGGCGTGGCCTAA BLAST psRNATarget
Ll_transcript_268025; FTRINITY_DN55855_c2_g1_i7 269 289 GATGATAATGGTGTGGTTCAT BLAST psRNATarget
Ll_transcript_268019; FTRINITY_DN55855_c2_g1_i5 269 289 GATGATAATGGTGTGGTTCAT BLAST psRNATarget
Ll_transcript_159097; FTRINITY_DN54727_c0_g1_i18 115 135 CATGACATTGGCGTGGCCTAA BLAST psRNATarget
Ll_transcript_159097; FTRINITY_DN54727_c0_g1_i18 319 339 CATGACATTGGCGTGGCCTAA BLAST psRNATarget
Ll_transcript_64791; FTRINITY_DN55300_c0_g1_i1 125 145 ATTGCTGTTGGTGCAGCTCAA BLAST psRNATarget
Ll_transcript_132959; FTRINITY_DN57521_c2_g1_i11 1885 1905 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_132951; FTRINITY_DN57521_c2_g1_i3 1885 1905 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_132954; FTRINITY_DN57521_c2_g1_i6 2034 2054 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_132958; FTRINITY_DN57521_c2_g1_i10 1885 1905 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_132956; FTRINITY_DN57521_c2_g1_i8 2034 2054 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_348613; TRINITY_DN52460_c2_g5_i3 1418 1438 AGGGATATTGGCGCGGCTCAA BLAST psRNATarget
Ll_transcript_348610; TRINITY_DN52460_c2_g5_i1 1601 1621 AGGGATATTGGCGCGGCTCAA BLAST psRNATarget
Ll_transcript_348611; TRINITY_DN52460_c2_g5_i2 1418 1438 AGGGATATTGGCGCGGCTCAA BLAST psRNATarget
Ll_transcript_348628; TRINITY_DN52460_c2_g5_i5 1601 1621 AGGGATATTGGCGCGGCTCAA BLAST psRNATarget
Ll_transcript_348624; TRINITY_DN52460_c2_g5_i4 1696 1716 AGGGATATTGGCGCGGCTCAA BLAST psRNATarget
Ll_transcript_361595; TRINITY_DN7864_c0_g1_i1 901 921 TGTGATATTGGAGCGGCTCAA BLAST psRNATarget
Ll_transcript_301658; TRINITY_DN48235_c0_g5_i1 10 30 CGGGATATTGGTGCGGTTCAA BLAST psRNATarget
Ll_transcript_444140; TRINITY_DN42606_c0_g1_i1 223 243 AATGATATTGGTGGGGCTCAA BLAST psRNATarget
Ll_transcript_444141; TRINITY_DN42606_c0_g1_i2 223 243 AATGATATTGGTGGGGCTCAA BLAST psRNATarget
Ll_transcript_341958; TRINITY_DN49811_c0_g3_i10 1376 1396 TGTGATATTGATGCGGCTCGA BLAST psRNATarget
Ll_transcript_341950; TRINITY_DN49811_c0_g3_i7 1471 1491 TGTGATATTGATGCGGCTCGA BLAST psRNATarget
Ll_transcript_341933; TRINITY_DN49811_c0_g3_i1 1867 1887 TGTGATATTGATGCGGCTCGA BLAST psRNATarget
Ll_transcript_341951; TRINITY_DN49811_c0_g3_i8 1962 1982 TGTGATATTGATGCGGCTCGA BLAST psRNATarget
Ll_transcript_474306; TRINITY_DN52013_c0_g6_i1 1066 1086 TCTGATGTTGGTTCGGCTCAA BLAST psRNATarget
Ll_transcript_474318; TRINITY_DN52013_c0_g6_i4 1225 1245 TCTGATGTTGGTTCGGCTCAA BLAST psRNATarget
Ll_transcript_384654; TRINITY_DN47285_c1_g2_i2 708 728 AATGAGATTGGTGTGGTTCAA BLAST psRNATarget
Ll_transcript_315953; TRINITY_DN46784_c2_g2_i5 52 72 TTTGATATTGATGCGGCTTGA BLAST psRNATarget
Ll_transcript_470998; TRINITY_DN42828_c0_g2_i1 290 310 TAAGGTATTGGCGCGCCTCAA BLAST psRNATarget
Ll_transcript_519566; TRINITY_DN51212_c1_g1_i16 215 235 TGTGATATTGGCTTGGTTCAC BLAST psRNATarget
Ll_transcript_361779; TRINITY_DN48462_c6_g1_i2 317 337 TGAGATATTGGTACGGTTCAA BLAST psRNATarget
Ll_transcript_361778; TRINITY_DN48462_c6_g1_i1 317 337 TGAGATATTGGTACGGTTCAA BLAST psRNATarget
Ll_transcript_293526; TRINITY_DN30949_c0_g1_i1 198 218 GGTGATATTGGGTTGGCTCAA BLAST psRNATarget
Ll_transcript_361774; TRINITY_DN48462_c3_g1_i1 200 220 CGGGATATTGATGCGGTTCAA BLAST psRNATarget
Ll_transcript_375572; TRINITY_DN47799_c3_g2_i2 32 52 TATGATATTGGCTTGGTTCAC BLAST psRNATarget
Ll_transcript_375569; TRINITY_DN47799_c3_g2_i1 32 52 TATGATATTGGCTTGGTTCAC BLAST psRNATarget
Ll_transcript_375567; TRINITY_DN47799_c3_g1_i1 32 52 TATGATATTGGCTTGGTTCAC BLAST psRNATarget
Ll_transcript_375573; TRINITY_DN47799_c3_g1_i4 32 52 TATGATATTGGCTTGGTTCAC BLAST psRNATarget
Ll_transcript_375571; TRINITY_DN47799_c3_g1_i3 32 52 TATGATATTGGCTTGGTTCAC BLAST psRNATarget
Ll_transcript_412680; TRINITY_DN73497_c0_g1_i1 214 234 TATGGTGTTGGCGTGGTACAA BLAST psRNATarget
Ll_transcript_294589; TRINITY_DN37495_c0_g1_i1 200 220 TAAGGTATTGGCGTGCCTCAA BLAST psRNATarget
Ll_transcript_318097; TRINITY_DN37170_c0_g1_i2 877 897 TTTGATATTGATGCGGCACAA BLAST psRNATarget
Ll_transcript_308924; TRINITY_DN47196_c3_g1_i6 549 569 ATTGATGTTGGTGTGGTTTAT BLAST psRNATarget
Ll_transcript_308929; TRINITY_DN47196_c3_g1_i11 686 706 ATTGATGTTGGTGTGGTTTAT BLAST psRNATarget
Ll_transcript_353980; TRINITY_DN49414_c2_g1_i6 1057 1077 GGTGATTGTGGCGCGGCTCGT BLAST psRNATarget
Ll_transcript_353986; TRINITY_DN49414_c2_g1_i12 1057 1077 GGTGATTGTGGCGCGGCTCGT BLAST psRNATarget
Ll_transcript_353981; TRINITY_DN49414_c2_g1_i7 1057 1077 GGTGATTGTGGCGCGGCTCGT BLAST psRNATarget
Ll_transcript_353984; TRINITY_DN49414_c2_g1_i10 1150 1170 GGTGATTGTGGCGCGGCTCGT BLAST psRNATarget
Ll_transcript_479573; TRINITY_DN52727_c6_g1_i8 166 186 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479583; TRINITY_DN52727_c6_g1_i18 166 186 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_483398; TRINITY_DN49355_c2_g1_i4 268 288 GATGATAATGGTGTGGTTCAT BLAST psRNATarget
Ll_transcript_367273; TRINITY_DN67019_c0_g1_i1 111 131 GTTGCTATTGGTGCTGCTCGA BLAST psRNATarget
Ll_transcript_483395; TRINITY_DN49355_c2_g1_i2 268 288 GATGATAATGGTGTGGTTCAT BLAST psRNATarget
Ll_transcript_483394; TRINITY_DN49355_c2_g1_i1 268 288 GATGATAATGGTGTGGTTCAT BLAST psRNATarget
Ll_transcript_479565; TRINITY_DN52727_c6_g1_i1 2199 2219 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_502639; TRINITY_DN77358_c0_g1_i1 147 167 ATTGCTGTTGGCGCGCTTCAA BLAST psRNATarget
Ll_transcript_479587; TRINITY_DN52727_c6_g1_i22 2050 2070 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479567; TRINITY_DN52727_c6_g1_i3 2050 2070 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479592; TRINITY_DN52727_c6_g1_i26 2199 2219 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479580; TRINITY_DN52727_c6_g1_i15 2050 2070 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479591; TRINITY_DN52727_c6_g1_i25 2271 2291 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479586; TRINITY_DN52727_c6_g1_i21 2122 2142 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479584; TRINITY_DN52727_c6_g1_i19 2287 2307 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479582; TRINITY_DN52727_c6_g1_i17 2199 2219 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479570; TRINITY_DN52727_c6_g1_i5 2050 2070 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479578; TRINITY_DN52727_c6_g1_i13 2199 2219 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479569; TRINITY_DN52727_c6_g1_i4 2359 2379 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479590; TRINITY_DN52727_c6_g1_i24 2359 2379 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479566; TRINITY_DN52727_c6_g1_i2 2271 2291 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479585; TRINITY_DN52727_c6_g1_i20 2271 2291 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479588; TRINITY_DN52727_c6_g1_i23 2287 2307 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479574; TRINITY_DN52727_c6_g1_i9 2287 2307 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget
Ll_transcript_479575; TRINITY_DN52727_c6_g1_i10 2199 2219 TCTGATTTTGGCATGGCTCGA BLAST psRNATarget

Expression of miRNA 407


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)