miRNA 438 details

Id Micro438
SequenceTTGTGTTCTCAGGTCACCCCT 
Annotated namesstu-miR398b-3p; 
Annotated pre-miRNAgma-MIR398b

Targets of miRNA 438

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_44480; FTRINITY_DN54194_c0_g2_i4 603 623 AGGGGCGACCTGAGAACACAT BLAST psRNATarget
Ll_transcript_44478; FTRINITY_DN54194_c0_g4_i5 3947 3967 AGGGGCGACCTGAGAACACGT BLAST psRNATarget
Ll_transcript_44490; FTRINITY_DN54194_c0_g4_i9 4284 4304 AGGGGCGACCTGAGAACACGT BLAST psRNATarget
Ll_transcript_44484; FTRINITY_DN54194_c0_g4_i7 4368 4388 AGGGGCGACCTGAGAACACGT BLAST psRNATarget
Ll_transcript_236684; FTRINITY_DN54483_c3_g2_i1 887 907 TTGGGTGAATTGAGAACACAG BLAST psRNATarget
Ll_transcript_228048; FTRINITY_DN52702_c0_g1_i8 192 212 GTGGGTTCCCTGAGAACACAG BLAST psRNATarget
Ll_transcript_228047; FTRINITY_DN52702_c0_g1_i7 1033 1053 GTGGGTTCCCTGAGAACACAG BLAST psRNATarget
Ll_transcript_228042; FTRINITY_DN52702_c0_g1_i3 1201 1221 GTGGGTTCCCTGAGAACACAG BLAST psRNATarget
Ll_transcript_228039; FTRINITY_DN52702_c0_g1_i2 1891 1911 GTGGGTTCCCTGAGAACACAG BLAST psRNATarget
Ll_transcript_228044; FTRINITY_DN52702_c0_g1_i5 2059 2079 GTGGGTTCCCTGAGAACACAG BLAST psRNATarget
Ll_transcript_37081; FTRINITY_DN58988_c2_g2_i9 518 538 CAATGTGATTTGAGAACACAA BLAST psRNATarget
Ll_transcript_37067; FTRINITY_DN58988_c2_g2_i2 518 538 CAATGTGATTTGAGAACACAA BLAST psRNATarget
Ll_transcript_81763; FTRINITY_DN49840_c1_g1_i5 606 626 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_81769; FTRINITY_DN49840_c1_g1_i11 714 734 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_81759; FTRINITY_DN49840_c1_g1_i1 724 744 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_81764; FTRINITY_DN49840_c1_g1_i6 767 787 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_81768; FTRINITY_DN49840_c1_g1_i10 789 809 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_81762; FTRINITY_DN49840_c1_g1_i4 1133 1153 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_81766; FTRINITY_DN49840_c1_g1_i8 1143 1163 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_81761; FTRINITY_DN49840_c1_g1_i3 1186 1206 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_81765; FTRINITY_DN49840_c1_g1_i7 1217 1237 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_81760; FTRINITY_DN49840_c1_g1_i2 1292 1312 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_81767; FTRINITY_DN49840_c1_g1_i9 1636 1656 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_32237; FTRINITY_DN58475_c1_g1_i1 348 368 TGGAGTCACCTGAGGGCACAA BLAST psRNATarget
Ll_transcript_238675; FTRINITY_DN54495_c1_g11_i1 545 565 TGGTGTGCCCTGAGGGCACAA BLAST psRNATarget
Ll_transcript_238677; FTRINITY_DN54495_c1_g11_i2 2308 2328 TGGTGTGCCCTGAGGGCACAA BLAST psRNATarget
Ll_transcript_59476; FTRINITY_DN56226_c0_g3_i2 770 790 ATGGGCGACTTGAGAACACTA BLAST psRNATarget
Ll_transcript_59484; FTRINITY_DN56226_c0_g3_i3 1095 1115 ATGGGCGACTTGAGAACACTA BLAST psRNATarget
Ll_transcript_202560; FTRINITY_DN56475_c2_g1_i5 584 604 AAGGTCGACTTGAGAACACAG BLAST psRNATarget
Ll_transcript_249103; FTRINITY_DN55958_c1_g4_i3 1016 1036 AGGGGTGGCCTGAGAAGGTGA BLAST psRNATarget
Ll_transcript_249093; FTRINITY_DN55958_c1_g4_i1 1648 1668 AGGGGTGGCCTGAGAAGGTGA BLAST psRNATarget
Ll_transcript_249105; FTRINITY_DN55958_c1_g4_i4 1767 1787 AGGGGTGGCCTGAGAAGGTGA BLAST psRNATarget
Ll_transcript_249100; FTRINITY_DN55958_c1_g4_i2 2079 2099 AGGGGTGGCCTGAGAAGGTGA BLAST psRNATarget
Ll_transcript_222780; FTRINITY_DN53191_c4_g4_i1 503 523 AGAGGTGACTTGGGAAGACAA BLAST psRNATarget
Ll_transcript_222781; FTRINITY_DN53191_c4_g4_i2 592 612 AGAGGTGACTTGGGAAGACAA BLAST psRNATarget
Ll_transcript_222786; FTRINITY_DN53191_c4_g4_i5 1804 1824 AGAGGTGACTTGGGAAGACAA BLAST psRNATarget
Ll_transcript_117161; FTRINITY_DN50902_c0_g1_i1 84 104 TGCGGTGGCCTGGGAACCCAA BLAST psRNATarget
Ll_transcript_117170; FTRINITY_DN50902_c0_g1_i8 84 104 TGCGGTGGCCTGGGAACCCAA BLAST psRNATarget
Ll_transcript_117163; FTRINITY_DN50902_c0_g1_i2 236 256 TGCGGTGGCCTGGGAACCCAA BLAST psRNATarget
Ll_transcript_117168; FTRINITY_DN50902_c0_g1_i6 84 104 TGCGGTGGCCTGGGAACCCAA BLAST psRNATarget
Ll_transcript_117169; FTRINITY_DN50902_c0_g1_i7 84 104 TGCGGTGGCCTGGGAACCCAA BLAST psRNATarget
Ll_transcript_117164; FTRINITY_DN50902_c0_g1_i3 236 256 TGCGGTGGCCTGGGAACCCAA BLAST psRNATarget
Ll_transcript_117171; FTRINITY_DN50902_c0_g1_i9 236 256 TGCGGTGGCCTGGGAACCCAA BLAST psRNATarget
Ll_transcript_601; FTRINITY_DN54633_c3_g3_i1 462 482 TAAGGTGGTTTGAGAGCATAA BLAST psRNATarget
Ll_transcript_172705; FTRINITY_DN57096_c2_g2_i5 1071 1091 ATTGGTGATATGAGAACATAA BLAST psRNATarget
Ll_transcript_172714; FTRINITY_DN57096_c2_g2_i10 2386 2406 ATTGGTGATATGAGAACATAA BLAST psRNATarget
Ll_transcript_172698; FTRINITY_DN57096_c2_g2_i3 2508 2528 ATTGGTGATATGAGAACATAA BLAST psRNATarget
Ll_transcript_259827; FTRINITY_DN57965_c0_g2_i1 333 353 TCGGGTGGTTTGGGAGCACGG BLAST psRNATarget
Ll_transcript_31318; FTRINITY_DN58446_c0_g7_i2 444 464 GAGGGTGATTTGAAGGCACAA BLAST psRNATarget
Ll_transcript_31331; FTRINITY_DN58446_c0_g7_i3 444 464 GAGGGTGATTTGAAGGCACAA BLAST psRNATarget
Ll_transcript_31315; FTRINITY_DN58446_c0_g7_i1 444 464 GAGGGTGATTTGAAGGCACAA BLAST psRNATarget
Ll_transcript_18081; FTRINITY_DN54565_c1_g2_i6 1613 1633 TCAGCTGACCTGGGAACACAC BLAST psRNATarget
Ll_transcript_18080; FTRINITY_DN54565_c1_g2_i5 2343 2363 TCAGCTGACCTGGGAACACAC BLAST psRNATarget
Ll_transcript_18079; FTRINITY_DN54565_c1_g2_i4 2530 2550 TCAGCTGACCTGGGAACACAC BLAST psRNATarget
Ll_transcript_176496; FTRINITY_DN47838_c0_g1_i1 305 325 AAGTGTGACCTGATGATACAA BLAST psRNATarget
Ll_transcript_422606; TRINITY_DN47985_c1_g5_i1 185 205 AGGGGCGACCTGAGAACACAT BLAST psRNATarget
Ll_transcript_422598; TRINITY_DN47985_c1_g2_i1 2204 2224 AGGGGCGACCTGAGAACACGT BLAST psRNATarget
Ll_transcript_422607; TRINITY_DN47985_c1_g2_i3 2415 2435 AGGGGCGACCTGAGAACACGT BLAST psRNATarget
Ll_transcript_422602; TRINITY_DN47985_c1_g2_i2 3146 3166 AGGGGCGACCTGAGAACACGT BLAST psRNATarget
Ll_transcript_415311; TRINITY_DN49665_c1_g1_i1 826 846 TTGGGTGAATTGAGAACACAG BLAST psRNATarget
Ll_transcript_471651; TRINITY_DN52015_c1_g4_i3 542 562 GTGGGTTCCCTGAGAACACAG BLAST psRNATarget
Ll_transcript_471653; TRINITY_DN52015_c1_g4_i4 1491 1511 GTGGGTTCCCTGAGAACACAG BLAST psRNATarget
Ll_transcript_471645; TRINITY_DN52015_c1_g4_i1 2349 2369 GTGGGTTCCCTGAGAACACAG BLAST psRNATarget
Ll_transcript_471649; TRINITY_DN52015_c1_g4_i2 3050 3070 GTGGGTTCCCTGAGAACACAG BLAST psRNATarget
Ll_transcript_424159; TRINITY_DN47964_c5_g1_i3 741 761 CAATGTGATTTGAGAACACAA BLAST psRNATarget
Ll_transcript_424162; TRINITY_DN47964_c5_g1_i6 741 761 CAATGTGATTTGAGAACACAA BLAST psRNATarget
Ll_transcript_503581; TRINITY_DN42195_c0_g2_i4 777 797 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_503579; TRINITY_DN42195_c0_g2_i2 997 1017 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_503580; TRINITY_DN42195_c0_g2_i3 1196 1216 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_503578; TRINITY_DN42195_c0_g2_i1 1416 1436 GTTGGTGACCTGGGAACACTA BLAST psRNATarget
Ll_transcript_505259; TRINITY_DN52522_c2_g5_i3 1229 1249 TGGTGTGCCCTGAGGGCACAA BLAST psRNATarget
Ll_transcript_505235; TRINITY_DN52522_c2_g5_i1 2221 2241 TGGTGTGCCCTGAGGGCACAA BLAST psRNATarget
Ll_transcript_426853; TRINITY_DN60582_c0_g1_i1 104 124 CTTGGTAATCTGAGAACATAA BLAST psRNATarget
Ll_transcript_314489; TRINITY_DN46787_c4_g4_i1 780 800 ATGGGCGACTTGAGAACACTA BLAST psRNATarget
Ll_transcript_314654; TRINITY_DN46732_c0_g3_i1 27 47 ATGAGGGATCTGAGAACACGA BLAST psRNATarget
Ll_transcript_344278; TRINITY_DN50424_c2_g1_i20 321 341 AAGGTCGACTTGAGAACACAG BLAST psRNATarget
Ll_transcript_344256; TRINITY_DN50424_c2_g1_i3 615 635 AAGGTCGACTTGAGAACACAG BLAST psRNATarget
Ll_transcript_344273; TRINITY_DN50424_c2_g1_i16 615 635 AAGGTCGACTTGAGAACACAG BLAST psRNATarget
Ll_transcript_344265; TRINITY_DN50424_c2_g1_i10 615 635 AAGGTCGACTTGAGAACACAG BLAST psRNATarget
Ll_transcript_360610; TRINITY_DN47644_c4_g6_i1 1602 1622 AGGGGTGGCCTGAGAAGGTGA BLAST psRNATarget
Ll_transcript_360618; TRINITY_DN47644_c4_g6_i3 1722 1742 AGGGGTGGCCTGAGAAGGTGA BLAST psRNATarget
Ll_transcript_360615; TRINITY_DN47644_c4_g6_i2 2074 2094 AGGGGTGGCCTGAGAAGGTGA BLAST psRNATarget
Ll_transcript_360626; TRINITY_DN47644_c4_g6_i6 2370 2390 AGGGGTGGCCTGAGAAGGTGA BLAST psRNATarget
Ll_transcript_360620; TRINITY_DN47644_c4_g6_i4 2490 2510 AGGGGTGGCCTGAGAAGGTGA BLAST psRNATarget
Ll_transcript_390945; TRINITY_DN46461_c0_g2_i4 629 649 AGAGGTGACTTGGGAAGACAA BLAST psRNATarget
Ll_transcript_390943; TRINITY_DN46461_c0_g2_i2 629 649 AGAGGTGACTTGGGAAGACAA BLAST psRNATarget
Ll_transcript_432819; TRINITY_DN44587_c0_g1_i2 83 103 TGCGGTGGCCTGGGAACCCAA BLAST psRNATarget
Ll_transcript_432827; TRINITY_DN44587_c0_g1_i7 235 255 TGCGGTGGCCTGGGAACCCAA BLAST psRNATarget
Ll_transcript_432820; TRINITY_DN44587_c0_g1_i3 83 103 TGCGGTGGCCTGGGAACCCAA BLAST psRNATarget
Ll_transcript_432824; TRINITY_DN44587_c0_g1_i5 83 103 TGCGGTGGCCTGGGAACCCAA BLAST psRNATarget
Ll_transcript_432822; TRINITY_DN44587_c0_g1_i4 235 255 TGCGGTGGCCTGGGAACCCAA BLAST psRNATarget
Ll_transcript_432828; TRINITY_DN44587_c0_g1_i8 83 103 TGCGGTGGCCTGGGAACCCAA BLAST psRNATarget
Ll_transcript_457637; TRINITY_DN49974_c2_g2_i1 155 175 TAAGGTGGTTTGAGAGCATAA BLAST psRNATarget
Ll_transcript_429107; TRINITY_DN52138_c4_g1_i3 2183 2203 ATTGGTGATATGAGAACATAA BLAST psRNATarget
Ll_transcript_429115; TRINITY_DN52138_c4_g1_i6 2389 2409 ATTGGTGATATGAGAACATAA BLAST psRNATarget
Ll_transcript_429101; TRINITY_DN52138_c4_g1_i2 2405 2425 ATTGGTGATATGAGAACATAA BLAST psRNATarget
Ll_transcript_414672; TRINITY_DN49622_c4_g1_i10 327 347 GAGGGTGATTTGAAGGCACAA BLAST psRNATarget
Ll_transcript_304145; TRINITY_DN48251_c0_g1_i1 365 385 TCGGGTGGTTTGGGAGCACGG BLAST psRNATarget
Ll_transcript_304146; TRINITY_DN48251_c0_g1_i2 365 385 TCGGGTGGTTTGGGAGCACGG BLAST psRNATarget
Ll_transcript_414671; TRINITY_DN49622_c4_g1_i9 396 416 GAGGGTGATTTGAAGGCACAA BLAST psRNATarget
Ll_transcript_414665; TRINITY_DN49622_c4_g1_i4 396 416 GAGGGTGATTTGAAGGCACAA BLAST psRNATarget
Ll_transcript_414662; TRINITY_DN49622_c4_g1_i2 462 482 GAGGGTGATTTGAAGGCACAA BLAST psRNATarget
Ll_transcript_414677; TRINITY_DN49622_c4_g1_i12 462 482 GAGGGTGATTTGAAGGCACAA BLAST psRNATarget
Ll_transcript_314175; TRINITY_DN46960_c0_g1_i1 1488 1508 TCAGCTGACCTGGGAACACAC BLAST psRNATarget
Ll_transcript_314177; TRINITY_DN46960_c0_g1_i2 1510 1530 TCAGCTGACCTGGGAACACAC BLAST psRNATarget
Ll_transcript_314183; TRINITY_DN46960_c0_g1_i3 2405 2425 TCAGCTGACCTGGGAACACAC BLAST psRNATarget
Ll_transcript_314187; TRINITY_DN46960_c0_g1_i6 2218 2238 TCAGCTGACCTGGGAACACAC BLAST psRNATarget
Ll_transcript_427565; TRINITY_DN69926_c0_g1_i1 404 424 AAGTGTGACCTGATGATACAA BLAST psRNATarget
Ll_transcript_395522; TRINITY_DN43526_c0_g1_i5 1138 1158 AAGGCTGATCCGGGAACACAA BLAST psRNATarget
Ll_transcript_370096; TRINITY_DN48640_c2_g4_i2 792 812 AAGAGTGATTTGAGCACACAA BLAST psRNATarget
Ll_transcript_370100; TRINITY_DN48640_c2_g4_i4 1214 1234 AAGAGTGATTTGAGCACACAA BLAST psRNATarget

Expression of miRNA 438


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)