miRNA 487 details

Id Micro487
SequenceGCGTACCAGGAGCCATGCATG 
Annotated namesNone; 
Annotated pre-miRNAmtr-MIR160a

Targets of miRNA 487

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_54935; FTRINITY_DN57285_c2_g1_i1 11 31 GATACATGGCTCCTGGTAAGC BLAST Degradome_Seq
Ll_transcript_170749; FTRINITY_DN57068_c1_g3_i1 1286 1306 CTTGCTTGGCGCTTGGTACGC BLAST Degradome_Seq
Ll_transcript_51863; FTRINITY_DN58850_c0_g1_i6 1479 1499 CTTGCTTGGCGCTTGGTACGC BLAST Degradome_Seq
Ll_transcript_165913; FTRINITY_DN80081_c0_g1_i1 397 417 CATGCAGGGTTCTTGGTATGG BLAST Degradome_Seq
Ll_transcript_32530; FTRINITY_DN58493_c0_g1_i11 420 440 TTTGCATGGTTTTTGGTCTGC BLAST Degradome_Seq
Ll_transcript_32526; FTRINITY_DN58493_c0_g1_i7 420 440 TTTGCATGGTTTTTGGTCTGC BLAST Degradome_Seq
Ll_transcript_71023; FTRINITY_DN56059_c9_g7_i1 67 87 TGTTCAAGGCTTCTGGTGCGT BLAST Degradome_Seq
Ll_transcript_219750; FTRINITY_DN56318_c3_g2_i7 822 842 GATTTCTGGCTCTTGGTACGT BLAST Degradome_Seq
Ll_transcript_219758; FTRINITY_DN56318_c3_g2_i11 822 842 GATTTCTGGCTCTTGGTACGT BLAST Degradome_Seq
Ll_transcript_219752; FTRINITY_DN56318_c3_g2_i9 822 842 GATTTCTGGCTCTTGGTACGT BLAST Degradome_Seq
Ll_transcript_219754; FTRINITY_DN56318_c3_g2_i10 822 842 GATTTCTGGCTCTTGGTACGT BLAST Degradome_Seq
Ll_transcript_219751; FTRINITY_DN56318_c3_g2_i8 822 842 GATTTCTGGCTCTTGGTACGT BLAST Degradome_Seq
Ll_transcript_273592; FTRINITY_DN54293_c4_g1_i7 1419 1439 CTTTTATGGCTGCTGGTACGT BLAST Degradome_Seq
Ll_transcript_273598; FTRINITY_DN54293_c4_g1_i11 1419 1439 CTTTTATGGCTGCTGGTACGT BLAST Degradome_Seq
Ll_transcript_144304; FTRINITY_DN51975_c0_g2_i1 704 724 GTTGTCTGGTTCCTGGTACAC BLAST Degradome_Seq
Ll_transcript_144306; FTRINITY_DN51975_c0_g2_i2 851 871 GTTGTCTGGTTCCTGGTACAC BLAST Degradome_Seq
Ll_transcript_259914; FTRINITY_DN57962_c0_g1_i8 1113 1133 TTTCCGTGGCACTTGGTACGC BLAST Degradome_Seq
Ll_transcript_259910; FTRINITY_DN57962_c0_g1_i5 1113 1133 TTTCCGTGGCACTTGGTACGC BLAST Degradome_Seq
Ll_transcript_489570; TRINITY_DN50330_c3_g4_i1 2798 2818 GATACATGGCTCCTGGTAAGC BLAST Degradome_Seq
Ll_transcript_465280; TRINITY_DN52672_c1_g2_i8 143 163 CTTGCTTGGCGCTTGGTACGC BLAST Degradome_Seq
Ll_transcript_465265; TRINITY_DN52672_c0_g1_i1 1467 1487 CTTGCTTGGCGCTTGGTACGC BLAST Degradome_Seq
Ll_transcript_465269; TRINITY_DN52672_c1_g2_i2 1304 1324 CTTGCTTGGCGCTTGGTACGC BLAST Degradome_Seq
Ll_transcript_465283; TRINITY_DN52672_c1_g2_i10 1304 1324 CTTGCTTGGCGCTTGGTACGC BLAST Degradome_Seq
Ll_transcript_465282; TRINITY_DN52672_c1_g2_i9 1304 1324 CTTGCTTGGCGCTTGGTACGC BLAST Degradome_Seq
Ll_transcript_465286; TRINITY_DN52672_c1_g2_i12 1304 1324 CTTGCTTGGCGCTTGGTACGC BLAST Degradome_Seq
Ll_transcript_398715; TRINITY_DN51949_c2_g4_i1 180 200 TTTGCATGGTTTTTGGTCTGC BLAST Degradome_Seq
Ll_transcript_344929; TRINITY_DN50494_c1_g2_i5 531 551 GATTTCTGGCTCTTGGTACGT BLAST Degradome_Seq
Ll_transcript_344926; TRINITY_DN50494_c1_g2_i3 719 739 GATTTCTGGCTCTTGGTACGT BLAST Degradome_Seq
Ll_transcript_344937; TRINITY_DN50494_c1_g2_i7 829 849 GATTTCTGGCTCTTGGTACGT BLAST Degradome_Seq
Ll_transcript_344923; TRINITY_DN50494_c1_g2_i2 829 849 GATTTCTGGCTCTTGGTACGT BLAST Degradome_Seq
Ll_transcript_344921; TRINITY_DN50494_c1_g2_i1 829 849 GATTTCTGGCTCTTGGTACGT BLAST Degradome_Seq
Ll_transcript_375286; TRINITY_DN47767_c1_g1_i7 1314 1334 TGTTCAAGGCTTCTGGTGCGT BLAST Degradome_Seq
Ll_transcript_375296; TRINITY_DN47767_c1_g1_i16 1483 1503 TGTTCAAGGCTTCTGGTGCGT BLAST Degradome_Seq
Ll_transcript_497066; TRINITY_DN50251_c3_g5_i1 749 769 GTTGTCTGGTTCCTGGTACAC BLAST Degradome_Seq
Ll_transcript_497070; TRINITY_DN50251_c3_g5_i2 896 916 GTTGTCTGGTTCCTGGTACAC BLAST Degradome_Seq
Ll_transcript_380799; TRINITY_DN51455_c0_g1_i14 1236 1256 TTTCCGTGGCACTTGGTACGC BLAST Degradome_Seq
Ll_transcript_380791; TRINITY_DN51455_c0_g1_i6 1236 1256 TTTCCGTGGCACTTGGTACGC BLAST Degradome_Seq
Ll_transcript_380794; TRINITY_DN51455_c0_g1_i9 1236 1256 TTTCCGTGGCACTTGGTACGC BLAST Degradome_Seq
Ll_transcript_380793; TRINITY_DN51455_c0_g1_i8 1236 1256 TTTCCGTGGCACTTGGTACGC BLAST Degradome_Seq

Expression of miRNA 487


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)