Protein coding transcript 5216

• Transcript: Ll_transcript_351772
• CDS coordinates: 102-5831 (+)
• Peptide sequence: MAPHSKTSHNNKNSENKPKIDKSSKKISKPKRDDAAATTAKSSALALQLQDEVPDFPRGGPVTGKRRNVREDYDDSDGDNYSRKKQNKKKGSNLSKKNAEPEDDWGSLSSDTITGKLPRRVNKITLKNITPGMKLWGVVVEVNAKDLVVSLPGGLRGLVHASDAVDPIFDDKIEVGESFLSTVFSVGQLVSCVVLKLDNDKKEKGTRKIWLSLRLSLLHKNFNLDVVQAGMVLAAYVKSIEDHGYILHFGLPSFTGFLPKNSSTEGLGSELKVGQLLQGLVRKIDKVRKVVYLSSDPDTLSKSVTKDLKGLSIDLLVPGMMVNARVKSILENGVMLSFLTYFTGTVDIFHLQNIYSASNWKDKYSESLKVIARILFIDPSSRAVGLTLNPHLVQNKAPPSHVKIGDIYDDSKVVRVDKGSGLLLEVPSIPESTPAFVSISEIAEKEIKKLEKMYKEGNHIRVRILGLRHLEGLATGVLKTSALEEVVFTHSDVKPGMVVKAKILSVDSFGSIVQIPGGVKALCPLAHMSELDIAKPGKKFKVGAELVFRVLGCKSKRVTVTHKKTLVKSKHAIISSYGDATDGLISHGWIANIELHGCFVRFYNGVQGFAPRSELGLEPGVDPGTVYNVGQVVKCRVISSIPASRRINLSFIIKPTRVVEGDTVRLGSLVSGIVDRVTANAVVVHVNASGISWGTISTEHLADHHGQANSMKSKLKPKYNFDQLLVLDIKGNNLILSAKASLIKYAQHIPADISQMQPNSVVHGYICNLIETGCFVRFLGQLTGFASRKMAADDQKTNILDAYYVGQSVRSNVSNISSETGRVTLSLKQTSCSSTDASFIQDYFLMDEKIAKLEYLGSGASDLKWDEGFNIGTVVKGKVADVKDVGVVISFEKYNDVIGFITNYQLAGTTVEKGSVVEALVLDIVKAEPLVDLTLKPDFFKKSKERSSTSKTNKKKRRRDASKDLVLHQSVNAVVEIVKENYLVLSIPENNYTIGYASISDYNTQKFHRKQFQNGQSVTATVMALPSPESSERLLLLLNEVNETSSSKRSKKKSTHQVGSLVEAEIIEIKSLELKLKFGFGLHGRVHITEVHDANDLENPFSSYRIGQTLTARIVAKPNEKSGKRMGSQWELSVRPKLIAGSGDIVDIVSGDLDFKIRQSVAGYVYKVENEWVWLTLSRNVRAQLYILDSASEPSELEDFQNRFHVGKPVSGHVLTINLEKKLLRLVLRPFSALPGAISEELQVDGINKELTAYIHKGDVLGGRISKILPGVGGLLVQVGPHIYGKVHFTELTDTLVPDPLSGYHEGKFVKCVVLEISHTVTGTVHIDLSLRPSNGMLSEDSEDAHSIVDLNSKPVEKIEDLHPDIIVKGYVKSVTPKGCFIMLSRKIDAKILLSNLSDEYVDDLEKEFPVGKLVTGRVISVEPLSSRVEVTLKTTSGSSKSKSVNIDFSKFHIGDVISGRIKRVESFGLFVAIDNTDMVGLCHISEVSDDRIDDIESKFRAGEKVNARILKVDEERHRISLGMKSSYMGDDSDLEMTSEQGSEEDPVPDSSLLETYNKDIEDDQIPILSQAKERESIPPLEVVLDDLDEFDVSNNNTQNEVQANEKATIDEKQKKREKIKAKQEREKQIRVAEERLLEEDIPRTADEFEKVVRSSPNSSFIWLKYMDFMISLADVEKARSIAERALRTINIREENEKLNIWKAYFNLENKFGNPKEEAIMKVFQRALQYNDPKKVHLALLGMYERTEQHDLADELCNKMTKKFKHSCKVWLRSVQSLLKQRRDGIQAIINRALLSLPRHKHIKFISQAAILEFKIGVPDRGRSLFEGILREYPKRTDLWSVYLDQEIQLKDPDVIRALFERAISLSLPAKKMKFLFKKYLEYEKSQGDEERIESVKGKAMEYVERTVS*
• ORF Type: complete

Annotations of Ll_transcript_351772

• Blastp: rRNA biogenesis protein RRP5 from Arabidopsis with 60.31% of identity
• Blastx: rRNA biogenesis protein RRP5 from Arabidopsis with 59.79% of identity
• Eggnog: thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity)(COG0539)
• Kegg: Link to kegg annotations (AT3G11964)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434480.1)
• Pfam: S1 RNA binding domain (PF00575.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;