miRNA 63 details

Id Micro63
SequenceATGGCTGCACTTAAAATGGGACGG 
Annotated namesosa-miR812v; 
Annotated pre-miRNANone

Targets of miRNA 63

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_60540; FTRINITY_DN56213_c1_g2_i3 1589 1612 CATGGCTATGTTAAGTGTAGCCAT BLAST psRNATarget
Ll_transcript_141162; FTRINITY_DN54092_c7_g1_i7 685 708 CTGTCTCCTTTTAGGTGCAGTCAT BLAST psRNATarget
Ll_transcript_141161; FTRINITY_DN54092_c7_g1_i6 685 708 CTGTCTCCTTTTAGGTGCAGTCAT BLAST psRNATarget
Ll_transcript_141159; FTRINITY_DN54092_c7_g1_i5 737 760 CTGTCTCCTTTTAGGTGCAGTCAT BLAST psRNATarget
Ll_transcript_141142; FTRINITY_DN54092_c7_g1_i2 737 760 CTGTCTCCTTTTAGGTGCAGTCAT BLAST psRNATarget
Ll_transcript_132586; FTRINITY_DN57589_c0_g4_i4 3851 3874 CTTTCCTATTTTGATTGCAGCCAT BLAST psRNATarget
Ll_transcript_132587; FTRINITY_DN57589_c0_g4_i5 4272 4295 CTTTCCTATTTTGATTGCAGCCAT BLAST psRNATarget
Ll_transcript_13356; FTRINITY_DN30801_c0_g1_i1 11 34 ACATTGTGTTTTAAGTGTAGCTAT BLAST psRNATarget
Ll_transcript_57263; FTRINITY_DN57843_c1_g1_i10 648 671 CAGGTTCATCTTGAGTGCAGCTGT BLAST psRNATarget
Ll_transcript_57246; FTRINITY_DN57843_c1_g1_i4 656 679 CAGGTTCATCTTGAGTGCAGCTGT BLAST psRNATarget
Ll_transcript_62093; FTRINITY_DN49086_c0_g1_i1 752 775 GATATGTATTTTAAGTGTGGTCAT BLAST psRNATarget
Ll_transcript_49262; FTRINITY_DN10939_c0_g1_i1 104 127 TGGTTCTATTTTAAGTGCTGTTGT BLAST psRNATarget
Ll_transcript_6614; FTRINITY_DN58557_c0_g1_i13 2409 2432 TTCTCTCATTTTAATTGCGGTTAT BLAST psRNATarget
Ll_transcript_6619; FTRINITY_DN58557_c0_g1_i18 2757 2780 TTCTCTCATTTTAATTGCGGTTAT BLAST psRNATarget
Ll_transcript_6612; FTRINITY_DN58557_c0_g1_i11 2913 2936 TTCTCTCATTTTAATTGCGGTTAT BLAST psRNATarget
Ll_transcript_6617; FTRINITY_DN58557_c0_g1_i16 2913 2936 TTCTCTCATTTTAATTGCGGTTAT BLAST psRNATarget
Ll_transcript_201973; FTRINITY_DN56476_c3_g1_i1 125 148 ACCACCTGTTTTAGGTGCATCTAT BLAST psRNATarget
Ll_transcript_293186; TRINITY_DN49162_c2_g6_i1 835 858 CATGGCTATGTTAAGTGTAGCCAT BLAST psRNATarget
Ll_transcript_528667; TRINITY_DN51083_c2_g1_i8 739 762 CTGTCTCCTTTTAGGTGCAGTCAT BLAST psRNATarget
Ll_transcript_528665; TRINITY_DN51083_c2_g1_i6 739 762 CTGTCTCCTTTTAGGTGCAGTCAT BLAST psRNATarget
Ll_transcript_528662; TRINITY_DN51083_c2_g1_i3 739 762 CTGTCTCCTTTTAGGTGCAGTCAT BLAST psRNATarget
Ll_transcript_528664; TRINITY_DN51083_c2_g1_i5 739 762 CTGTCTCCTTTTAGGTGCAGTCAT BLAST psRNATarget
Ll_transcript_445873; TRINITY_DN51871_c5_g6_i1 1402 1425 CTTTCCTATTTTGATTGCAGCCAT BLAST psRNATarget
Ll_transcript_451960; TRINITY_DN40795_c0_g2_i1 62 85 TGTGTTCGTTTTAAGTGGAGCCGT BLAST psRNATarget
Ll_transcript_409875; TRINITY_DN51640_c2_g1_i3 547 570 CAGGTTCATCTTGAGTGCAGCTGT BLAST psRNATarget
Ll_transcript_494803; TRINITY_DN43679_c0_g1_i2 753 776 GATATGTATTTTAAGTGTGGTCAT BLAST psRNATarget
Ll_transcript_489099; TRINITY_DN50358_c0_g1_i3 3114 3137 TGGTTCTATTTTAAGTGCTGTTGT BLAST psRNATarget
Ll_transcript_530394; TRINITY_DN51093_c0_g1_i2 1968 1991 TTCTCTCATTTTAATTGCGGTTAT BLAST psRNATarget
Ll_transcript_530399; TRINITY_DN51093_c0_g1_i7 2770 2793 TTCTCTCATTTTAATTGCGGTTAT BLAST psRNATarget
Ll_transcript_530392; TRINITY_DN51093_c0_g1_i1 2883 2906 TTCTCTCATTTTAATTGCGGTTAT BLAST psRNATarget
Ll_transcript_345549; TRINITY_DN50417_c0_g1_i19 2852 2875 GTATCCCATTTTAAGTTTAGCCTT BLAST psRNATarget
Ll_transcript_345547; TRINITY_DN50417_c0_g1_i18 2951 2974 GTATCCCATTTTAAGTTTAGCCTT BLAST psRNATarget
Ll_transcript_345536; TRINITY_DN50417_c0_g1_i9 2954 2977 GTATCCCATTTTAAGTTTAGCCTT BLAST psRNATarget
Ll_transcript_373288; TRINITY_DN47031_c1_g3_i9 2171 2194 TTTTTACATTTTGGGTGTGGCTAT BLAST psRNATarget
Ll_transcript_304945; TRINITY_DN52249_c2_g1_i8 2348 2371 CAATCCACTTTTAGGTGTAGTCAT BLAST psRNATarget
Ll_transcript_373282; TRINITY_DN47031_c1_g3_i5 2851 2874 TTTTTACATTTTGGGTGTGGCTAT BLAST psRNATarget
Ll_transcript_304939; TRINITY_DN52249_c2_g1_i2 2456 2479 CAATCCACTTTTAGGTGTAGTCAT BLAST psRNATarget

Expression of miRNA 63


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)